H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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H-Invitational ID: HIT000645877 Accession number: FJ385457 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Ig kappa chain V-IV region; Precursor; Fragment;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number FJ385457.1 CAGE tag ID NA EST ID NA Clone Number NA Experimental resources   NBRC ; HGPD ; Sequence data provider NA Annotation project NA Length of cDNA 296[bp] (No. of exon:1)[A:72 T:69 G:74 C:81] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type NA Develpmental stage NA
Sequence quality information CDS feature N/C-truncated Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA	AGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGT CCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGG TACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATC TACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGA CAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTT TATTACTGTCAGCAATATTATAGTACTCCTTGGACGTTCGGCCAAG

Gene structure information

H-Inv cluster ID		HIX0029781
Genomic location	Chromosome	2
	Location	2p11.2
	Position	89185390- 89185669
	Strand	+
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NA
	Ensembl	ENST00000390243;
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000435651 Predicted CDS 2..296;  98[aa];  Orientation:+2;  Codon Adaptation Index (CAI).

DSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWAS TRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPWTFGQ

Motif information

	a.a. length	InterPro	Name
	87	IPR007110	Immunoglobulin-like [Domain]
	97	IPR013783	Immunoglobulin-like fold [Domain]
	97	IPR013106	Immunoglobulin V-set [Domain]
	79	IPR003596	Immunoglobulin V-set, subgroup [Domain]

Gene function information

H-Inv ID		HIT000645877
H-Inv cluster ID		HIX0029781
Accession number		FJ385457.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Similar to Ig kappa chain V-IV region; Precursor; Fragment;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P06312)  [Identity/coverage = 100.0%/76.86%] to Homo sapiens (Human). protein.
Experimental evidence		Protein evidence
PubMed ID		2997712;  ALL;
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
	DDBJ	NA
	UniProt	IGKV4-1
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000435651
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	ENST00000390243;
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	nuclear;  cytosol;  extracellular;
Target P	Other
SOSUI	soluble protein
TMHMM	soluble protein
PTS1
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:NA Title:NA
Co-localized orphan diseases		OMIM ID:  600666;  607329;  609402;
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	NA
	Disease	NA
	Substance	NA
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 3 .. 3 A/G rs116328981 + CDS Nonsynonymous[Asp1Gly] 17 .. 17 T/C rs72847567 + CDS Nonsynonymous[Ser6Pro] 65 .. 65 T/C rs72847569 + CDS Synonymous[Leu22Leu] 72 .. 72 G/A rs78280375 + CDS Nonsynonymous[Ser24Asn] 89 .. 89 T/A/C rs7606636 + CDS 130 .. 130 G/A rs115736498 + CDS Synonymous[Lys43Lys] 131 .. 131 C/T rs112784030 + CDS Synonymous[Leu44Leu] 207 .. 207 T/A rs72847570 + CDS Nonsynonymous[Phe69Tyr] 253 .. 253 T/C rs1141252 + CDS Synonymous[Tyr84Tyr] 255 .. 255 A/T rs1141253 + CDS Nonsynonymous[Tyr85Phe] 256 .. 256 C/T rs1134821 + CDS Synonymous[Tyr85Tyr] 265 .. 265 A/G rs111711225 + CDS Synonymous[Gln88Gln]  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;