H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000559089 Accession number: FM178004 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to POU domain, class 5, transcription factor 1; Octamer-binding protein 3; Oct-3; Octamer-binding protein 4; Oct-4; Octamer-binding transcription factor 3; OTF-3;
 
 

Transcript original information
Accession number FM178004.1
CAGE tag ID NA
EST ID NA
Clone Number BM-TAKA-13
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 381[bp] (No. of exon:1)[A:84 T:64 G:131 C:102]
Devision HUM
Molecular type mRNA
Library origin Cell type bone marrow mesenchymal stem cells
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N/C-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0028582
Genomic location  G-integra Help Chromosome 1
Location 1q22
Position 155403093- 155403473
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:645682
KEGG GENES KEGG GENES(645682)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000381542
Predicted CDS 3..381;  126[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.806

Motif information
ORF

length(126),orf(3:381)
PGGPGIGPGVGSGSEVWGIPPCPPLYEFCGGMAYCGPQVGVRLVPQGGLE
TSQPEGEAGVRVESNSDGTSLEPCTVPPGAVKLEKEKLEQNPQESQNIKA
LQKELEQFAKLLKQKRITLGYTQADV
a.a.
length
InterPro Name
length(126), motif(1:126) 126 IPR015585 POU domain-containing protein, class 5 [Family]
length(30), motif(97:126) 30 IPR000327 POU-specific [Domain]
length(29), motif(98:126) 29 IPR010982 Lambda repressor-like, DNA-binding domain [Domain]
length(27), motif(100:126) 27 IPR000327 POU-specific [Domain]
length(25), motif(102:126) 25 IPR010982 Lambda repressor-like, DNA-binding domain [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000559089
H-Inv cluster ID Locus viewHIX0028582
Accession number FM178004.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to POU domain, class 5, transcription factor 1; Octamer-binding protein 3; Oct-3; Octamer-binding protein 4; Oct-4; Octamer-binding transcription factor 3; OTF-3;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q01860)  [Identity/coverage = 92.857%/35.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 1408763790826485678141457440415489334162298211670243018035408181916111927406320604894ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ POU5F1P4
UniProt POU5F1
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000381542
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:645682
KEGG GENES KEGG GENES(645682)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function DNA binding (GO:0003677);  transcription factor activity (GO:0003700); 
Biological process regulation of transcription, DNA-dependent (GO:0006355); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
39 .. 39 G/A rs7355130 + CDS Nonsynonymous[Gly13Ser]
188 .. 188 G/A rs113187508 + CDS Synonymous[Val62Val]
228 .. 228 G/A rs116422863 + CDS Nonsynonymous[Val76Ile]
230 .. 230 C/G rs181779936 + CDS Synonymous[Val76Val]
234 .. 234 C/T rs113634850 + CDS Nonsynonymous[Pro78Ser]
278 .. 278 G/A rs184363090 + CDS Synonymous[Pro92Pro]
315 .. 315 C/T rs55762646 + CDS Nonsynonymous[Leu105Phe]
352 .. 352 T/A rs12124051 + CDS Nonsynonymous[Ile117Asn]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer