H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000497125 Accession number: AK302501 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Pogo transposable element with ZNF domain isoform 5.
 
 

Motif information
ORF

length(1348),orf(66:4112) MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTTAGNPLVQQG GQPLILTQNPAPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQ GFPVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVP QVFSQMTPVGPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTP STSTTPTATQPTSLGQLAVQSPGQSNQTTNPKLVSIASFVTVKRPGVTGE NSNEVAKLVNTLNTIPSLGQSPGPVVVSNNSSAHGSQRTSGPESSMKVTS SIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLD SEPSVPSAAKPPSPEKTAPVASTPSSTPIPALSPPTKVPEPNENVGDAVQ TKLIMLVDDFYYGRDGGKVAQLTNFPKVATSFRCPHCTKRLKNNIRFMNH MKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKC KICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMI HEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDK IEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSNDTPPSAL QEAAPLTSSMDPLPAFLYPPVQRSIQKRAVRKMSVMGRQTCLECSFEIPD FPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSG IKLACTSCTFVTSVGDAMAKHLVFNPSHRSSSILPRGLTWIAHSRHGQTR DRVHDRNVKNMYPPPSFPTNKAATVKSAGATPAEPEELLTPLAPALPSPA STATPPPTPTHPQALALPPLATEGAECLNVDDQDEGSPVTQEPELASGGG GSGGVGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQA SQGENLEGKYLSFEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLE ... 		a.a.
length		 InterPro Name
length(23), motif(432:454) 23 IPR015880 Zinc finger, C2H2-like [Domain]
length(28), motif(432:459) 28 IPR007087 Zinc finger, C2H2-type [Domain]
length(21), motif(434:454) 21 IPR007087 Zinc finger, C2H2-type [Domain]
length(24), motif(468:491) 24 IPR015880 Zinc finger, C2H2-like [Domain]
length(29), motif(468:496) 29 IPR007087 Zinc finger, C2H2-type [Domain]
length(22), motif(470:491) 22 IPR007087 Zinc finger, C2H2-type [Domain]
length(24), motif(498:521) 24 IPR015880 Zinc finger, C2H2-like [Domain]
length(22), motif(500:521) 22 IPR007087 Zinc finger, C2H2-type [Domain]
length(24), motif(528:551) 24 IPR015880 Zinc finger, C2H2-like [Domain]
length(23), motif(557:579) 23 IPR015880 Zinc finger, C2H2-like [Domain]
length(21), motif(559:579) 21 IPR007087 Zinc finger, C2H2-type [Domain]
length(23), motif(585:607) 23 IPR015880 Zinc finger, C2H2-like [Domain]
length(22), motif(587:608) 22 IPR007087 Zinc finger, C2H2-type [Domain]
length(24), motif(709:732) 24 IPR015880 Zinc finger, C2H2-like [Domain]
length(26), motif(753:778) 26 IPR015880 Zinc finger, C2H2-like [Domain]
length(71), motif(953:1023) 71 IPR006600 Pogo transposase / Cenp-B / PDC2, DNA-binding HTH domain [Domain]
length(64), motif(955:1018) 64 IPR009057 Homeodomain-like [Domain]
length(65), motif(959:1023) 65 IPR006600 Pogo transposase / Cenp-B / PDC2, DNA-binding HTH domain [Domain]
length(61), motif(965:1025) 61 IPR004906 Pogo transposase / Cenp-B / PDC2, subgroup, DNA-binding HTH domain [Domain]
length(52), motif(966:1017) 52 IPR012287 Homeodomain-related [Domain]
length(167), motif(1061:1227) 167 IPR004875 DDE superfamily endonuclease, CENP-B-like [Family]