H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000435350 Accession number: BC142647 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Uncharacterized protein;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number BC142647.1 CAGE tag ID NA EST ID NA Clone Number IMAGE:40147971 Experimental resources   NBRC ; HGPD ; Antibody (ZNF609) ; Catalog (ZNF609); Sequence data provider NA Annotation project NA Length of cDNA 3890[bp] (No. of exon:2)[A:1035 T:1037 G:1055 C:763] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type Donated clones,Novartis FGA collection Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA Site: 3864(+) Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

CGGGAACGGATGGCGGCCTGGGCCCCGTAGCAGCGGCGGCTCTACGGCCC GGGGCCCCGGGCGGGCGGAGGTGGCGGCTCCCGGGACCGGCCGCGCGCAA TGATGTTGTCCACTGGGCATGTACTGACCAATGTGGCAGGTCTGAGAACA TAGCTGAAGCTGAAAATAGGAAAGCTGGGGGCAAGGAAGAGCCTTGAATC TTGAGGTGGGACGTTGACTCTAAGATGTCCTTGAGCAGTGGAGCCTCCGG AGGGAAAGGAGTGGATGCAAACCCGGTTGAGACATACGACAGTGGGGATG AATGGGACATTGGAGTAGGGAATCTCATCATTGACCTGGACGCCGATCTG GAAAAGGACCAGCAGAAACTGGAAATGTCAGGCTCAAAGGAGGTGGGGAT ACCGGCTCCCAATGCTGTGGCCACACTACCAGACAACATCAAGTTTGTGA CCCCAGTGCCAGGTCCTCAAGGGAAGGAAGGCAAATCAAAATCCAAAAGG AGTAAGAGTGGCAAAGACACTAGCAAACCCACTCCAGGGACTTCCCTGTT CACTCCAAGTGAGGGGGCAGCTAGCAAGAAAGAGGTGCAGGGGCGCTCAG GAGATGGTGCCAATGCTGGAGGCCTGGTTGCTGCTATTGCTCCCAAGGGC TCAGAGAAGGCGGCTAAGGCATCCCGCAGTGTAGCCGGTTCCAAAAAGGA GAAGGAGAACAGCTCATCTAAGAGCAAGAAGGAGAGAAGCGAAGGAGTGG GGACTTGTTCAGAAAAGGATCCTGGGGTCCTCCAGCCAGTTCCCTTGGGA GGACGGGGTGGTCAGTATGATGGAAGTGCAGGGGTGGATACAGGAGCTGT GGAGCCACTTGGGAGTATAGCTATTGAGCCTGGGGCAGCGCTCAATCCTT TGGGAACTAAACCGGAGCCAGAGGAAGGGGAGAATGAGTGTCGCCTGCTA AAGAAAGTCAAGTCTGAAAAGGTAAGAGGTGGCCAGATATGGCTGCCCAC TGACTGCCAGTCAGAACTGCCCTGGACTAACTGCCAAATACTATGTGTAC TCTGTGGGAGGCTCATTAGTGTGTGGGTAATGACCAATTACAAGGTCAGA GCAGCTGGTAATGATAATGTGGTTTTCTTCCAAATTATAGGATTCCCCTA CAGACTCATTTACAGCAGGCCTGGACATTGTGGAACAGGATATTTGTTGT TGGGGGCAGCTACTTTGTAGAATGAACTTTCTGTAGTCTGAGTTGAGACC TTCCCACCTTGTCTTTGCCCACCTCAGACACTTGTTGGTAGAGATTGGCA TCAGACCTTTATTTGTTTCCCAGCTTGACTGGCATTTCATCATCAGACTC ATAATAGTTGATAAACAATACGCCTTTGGTGATAATGTAGATTGAGTACG GTTCTTGATGGGATAAATGGTGCTGTTGGGTCTCTGGTAGAACAAAGGGC TAAATTTCATGGCATATCTACGAAGTGTTCTATTGCCGGCTACCAAAGAG CAAAGGGGCACATTTTGAGGGCAAGAGGTACTCATTGTACTTTGAGGTAC TTAGATCTTATGAGTTATTGTTGTGGTTATGACAGTTTGGCCTAGGAAGA GATTGGCCATTAAAGGTGTAGCTTCATGCCAGGTATCTCCCACAACTATT AGGAATCAAAGTCTCCTCGTGGTTTAATAGCTGCCAACAGTGTAATGATA CCTTGCCTTCTGCTTGACTTGGAAGGACAGGTGCCTGCAGCCCCAGGAGG GGTTAGAACTGAGTCCCTCCTCTGGGAAGATGATCTTAGTTCATGCTTTA GGAAATGGAACTTGCAGGGCTGGAGGAGAATGGGTGTGAGTCTAGGGTCA GCTCAGGCAGCATTAAACTTCAGCAGCTTATTCCTGCAAAACAGTGGCCT TGTGGTGAGCTGTTCATTGGCTCTTGATTTTCTGCTCTGTGCTCTGCTCA TCCTGTGCTTTCAGCTGATCCCAGCAGATGCAGTATAAATTGATTTCTCT GTAATTAGATCAGCTGCAGCAGGGAATACCTATTTCCATATGTAAGTGTT AATAAATAAAGGCTGGATGTGTATGTTTGGGTGGTGGTGCCCTCTTAGTG CCTGTATTCCAGTGGTAGCTCATGCTTTCTTTGCTGTCGGTATTTTGGTC TTTGCCTCTGGCACATCTGTAGCTCTTAGCAACATCTGGGCTTCTCCAGT AGCAGGTCTGTGAGTTTCTTCCGCTAATAATACAGTGGCTCATTCCCTTT TACCAGTGGCAGCTGCCAGAGAGGCTGCCTGTGTTTAGGTGGCAGATGCT ATAGTCCACTTCAGCAGAGTCAGGTTCCAGCTGGTTACTAGCTTGGCTCA TCCTGTGCTGGCTGTGATTTGCTATTTTCTCTCGGGTACAGATGGATAAT ACTGTTTTAAAGAGGCTTAGGAGTACTAGCAGTTGTTGCTTCTGTTCCAG GCCCATTAGACTGTTCCCTACATCTGGCTTCAAGAAACTCTTGCCATATA TCCATATTCATAATCATTATTCTTCCTGTGCTAAAAAGTACTTCTGAGGA TGACCTTCATTCTCCTATCTAAATTTTAGAGTACTTATGTTGCAACCTTC TAAGCCCAGTGATAGTCTGTGGATGAAAGGATTAATATTGCTTAGCTTTA TGTTGGATTTAAGTGTAAATGTCCATGATTGTCTCTAACAGAGAAGCAAA TGGAACCCATTTTCTCACATAGAGGTGCAGGGACTGATTGGGTGGCTGCC CTTCAGATTATAATTGGGCTGAAAGATGCAGTATGTTCAGCTAAGAATAC ATCCTGGTGCCAGGGAGTTTTGTCCCTTAATAATGTTGCTTTGCCATATA AGCTTTGCCTCCCAGGGAGACTCTGAGAATGGGGCAGCAGAATGAGAAAG AAAAGGGAAAGAGACTGTGCTTCAGTTTTTGAAAGATAGAGAAAATTGCT GGCAATTACTTTTAGAAGCAGAAAATTTGCTATACAGTTTCATGTAACCA TAAGCAAGAACCTGCTTTCTCAATTCCTTCCCCTGTTCCCTCAACCCTTT TGGACAGTCTGGTCCTGAGGGTGCCTTTCCATATTACCTTTGGCTATTGA AATAAATAATTATTTAAATAAATGTTTGGAAGTTGCTAGGAGATTAAAAC ATGCTGTGCAGGGAGAGAACATTTCTGGACTGGGAGGAGCAGAAGAGGCA AGTTAAAGGAAAGGAAGTTAGGAACCATGCAGAGGAGCGGTTTTTGAGAA ACAACAATCTCCGGTTTGGGGCATAATAGGTGCTCAGTGAGTATTTGATG ATTAGTACTATAATTTATAAGCAAAGTCTTTGAAAACTTCTTTAAAATTT TCTCTCTGAGAAATGGGCTTGCCTGTGGTTTGGGACGTTTCTATGTAGGG ATAACAAACAGAACCAAAATAGCAAAACAGATGTTTTGATATAATCTAAG AATTGCATCCTCTCAACTGGGAACTGTCATGAAGAGGAAGAACTCATAAA ATTTGGGAAGTTTCTTGACTGAATTCTGTGGTGCAGAGTAGCAGTGTTGA CTACTAGCCAATGAGGAAGATTTGAATATTGAAATTACTGGCTGGGCCTG GTGATTCATGCCTGTAATCCCAGCACTTTGGGAGGCCTAGGTGGGCAGAT TGCTTAAGCTCAGGAGTTTGAGACCAGCCTAGGCAACATGGTGAAACCCT GTCTCTACAAAAATTAGCCGGGCATTGGTGGTGTGCACCCGTAATCCCAG CTACTGGGGAGGCTGAGGTGGAAGGATAGCTTGAGCCTGCGAGGTGGAGG TTGCATTGAGCTGAGACGGCACCACTGGACTCCAGCCTAGGCAATAGAGC CAGACCTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gene structure information

H-Inv cluster ID		HIX0012341
Genomic location	Chromosome	15
	Location	15q22.31
	Position	64752941- 64795258
	Strand	+
Possible duplicated location(s)		NA
Gene structure		2 exon(s)
Database links	RefSeq	NM_015042;
	Ensembl	ENST00000326648;  ENST00000416172;
	Entrez Gene	Entrez Gene ID:23060;
	KEGG GENES	KEGG GENES(23060);
	GeneCard	ZNF609;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000199604 Predicted CDS 225..1220;  331[aa];  Orientation:+3;  Codon Adaptation Index (CAI). 0.74 Database links RefSeq NA UniProt A5PKW6;  CCDS NA

MSLSSGASGGKGVDANPVETYDSGDEWDIGVGNLIIDLDADLEKDQQKLE MSGSKEVGIPAPNAVATLPDNIKFVTPVPGPQGKEGKSKSKRSKSGKDTS KPTPGTSLFTPSEGAASKKEVQGRSGDGANAGGLVAAIAPKGSEKAAKAS RSVAGSKKEKENSSSKSKKERSEGVGTCSEKDPGVLQPVPLGGRGGQYDG SAGVDTGAVEPLGSIAIEPGAALNPLGTKPEPEEGENECRLLKKVKSEKV RGGQIWLPTDCQSELPWTNCQILCVLCGRLISVWVMTNYKVRAAGNDNVV FFQIIGFPYRLIYSRPGHCGTGYLLLGAATL*

Gene function information

H-Inv ID		HIT000435350
H-Inv cluster ID		HIX0012341
Accession number		BC142647.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (E0CYU4)  [Identity/coverage = 97.826%/100.0%] to Mus musculus (Mouse). protein.
Experimental evidence		Protein evidence
PubMed ID		19468303;  ALL;
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	ZNF609
	HGNC aliases	NA
	HGNC name	zinc finger protein 609
	DDBJ	ZNF609
	UniProt	Zfp609
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000199604
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_015042;
	Ensembl	ENST00000326648;  ENST00000416172;
	Entrez Gene	Entrez Gene ID:23060;
	KEGG GENES	KEGG GENES(23060);
	GeneCard	ZNF609;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	mitochondria;  peroxisome;  cytosol;  Other;
Target P	Other
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 159 .. 159 G/C rs28375759 + 5'UTR 243 .. 243 G/C rs28675233 + CDS Nonsynonymous[Ala7Pro] 696 .. 696 A/G rs112985965 + CDS Nonsynonymous[Lys158Glu] 839 .. 839 T/C rs61910735 + CDS Synonymous[Asp205Asp] 879 .. 879 C/A rs111749212 + CDS Nonsynonymous[Pro219Thr] 978 .. 978 G/A rs34201704 + CDS Nonsynonymous[Gly252Ser] 1138 .. 1138 T/G rs16948021 + CDS Nonsynonymous[Ile305Arg] 1198 .. 1198 T/G rs114261342 + CDS Nonsynonymous[Leu325Trp] 1400 .. 1400 G/A rs115804441 + 3'UTR 1502 .. 1502 A/G rs640005 + 3'UTR 1581 .. 1581 G/T rs76642136 + 3'UTR 1589 .. 1589 G/T rs76532896 + 3'UTR 1633 .. 1633 G/A rs117518314 + 3'UTR 2223 .. 2223 G/A rs576926 - 3'UTR 2246 .. 2246 C/T rs28510397 + 3'UTR 3023 .. 3023 A/G rs114200241 + 3'UTR 3179 .. 3179 A/C rs76810023 + 3'UTR 3378 .. 3378 G/C rs72741368 + 3'UTR 3681 .. 3681 A/G rs1141937 + 3'UTR 3864 ^ 3865 -/A/AA rs67246066 + 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  Type Start End Strand AluJb 3590 3890 + Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;