H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000390089 Accession number: BC130299 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number BC130299.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:163171 IMAGE:40146330
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 486[bp] (No. of exon:3)[A:120 T:123 G:107 C:136]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Pooled, cerebellum, kidney, placenta, testis, lung, colon, liver, heart, thyroid, bladder, uterus, PCR rescued clones
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0200727
Genomic location  G-integra Help Chromosome 5
Location 5q31.1
Position 131755556- 131796622
Strand +
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:441108
KEGG GENES KEGG GENES(441108)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000042872
Predicted CDS 30..410;  126[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.761
Database links RefSeq NA
UniProt Q8N8D9
CCDS NA

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000390089
H-Inv cluster ID Locus viewHIX0200727
Accession number BC130299.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ LOC441108
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000042872
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:441108
KEGG GENES KEGG GENES(441108)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  nuclear;  cytosol;  Other; 
Target P Other
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Pan sp. (Chimpanzee) ENSPTRT00000049084 G-integraG-integra
Orthology Macaca sp. (Macaque) XM_001103876 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
48 .. 48 G/A rs141261806 + CDS Nonsynonymous[Gly7Arg]
82 .. 82 C/T rs141757666 + CDS Nonsynonymous[Pro18Leu]
150 .. 150 C/G rs6888107 + CDS Nonsynonymous[Leu41Val]
176 .. 176 G/A rs201563899 + CDS Synonymous[Leu49Leu]
206 .. 206 C/T rs140600303 + CDS Synonymous[Pro59Pro]
207 .. 207 G/A rs149784064 + CDS Nonsynonymous[Val60Met]
265 .. 265 C/T rs145678679 + CDS Nonsynonymous[Pro79Leu]
325 ^ 326 -/A rs35610597 + CDS
362 .. 362 C/T rs2522048 + CDS Synonymous[His111His]
434 ^ 435 -/GGCGGGGGGG rs143567616 + 3'UTR
437 .. 437 C/T rs2522049 + 3'UTR
473 .. 473 C/T rs2522050 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L2a 285 418 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer