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H-Invitational ID: HIT000387640 Accession number: BC117350 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Conserved hypothetical protein.

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number BC117350.1 CAGE tag ID NA EST ID NA Clone Number IMAGE:40125901 Experimental resources   NBRC ; HGPD ; Sequence data provider NA Annotation project NA Length of cDNA 643[bp] (No. of exon:5)[A:157 T:180 G:145 C:161] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type Testis, PCR rescued clones Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NMD predicted;  Truncation;  Notes NA

TGTCACTCTCTTGGGCTTGAAATGGAACAGATCTTCTTGTTCCATCTCTT TCTGATAGCGCCAGTTCCTGCTGAGGACAGAACATTGTCTTCTTTTCTCC CTGCCTCAGGCAGATGGCAGGGAGTGTTGTGTGTTCCCACAAAGGAGCGT GCTGTCCCCGCTCCCGAGTCTCTCAGCGAGCCCTGTCATGGAAGGCATCC AGGAGAATGTGGAACTCCGCACCCGCTTTCTCAGAACAGAGGAGCATCCA TGACCCTCAGAATCACAGCATTGAGAGGTATGTATCAACTCCAGGTCTCT GCATTTGTCCGCGTTCTTCACTGTCATGTGGCTCCTCCCGATGTGATAGC AAAGATGCCCGTGGACAAACCAGGCTTGGGTCCATCATGTTGGCAATCTG GAGGAAGCCGAGCACTTTTTCTCCAACTGACTCAGTCCCAGGACTGGCTC TCATTTGCCCAGCTTGTGCAGAATCTCATTGTCCTAATGTTAAATATATA TCATCAGTGCTCAATGTTACAGCTTCAAACATAGAAGATACAAGAAGTAA ATGCTGAGATTTCGCTATTTGTTAACCTATCATGTGATGAACCTATACAA ATTGTGTAAAGCAAATGTTTTCAGGCATTGGATGTCAAGCAGC

Gene structure information

H-Inv cluster ID		HIX0034586
Genomic location	Chromosome	8
	Location	8q24.22
	Position	136246482- 136308798
	Strand	+
Possible duplicated location(s)		NA
Gene structure		5 exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:286094;
	KEGG GENES	KEGG GENES(286094);
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000049447 Predicted CDS 22..534;  170[aa];  Orientation:+1;  Codon Adaptation Index (CAI). 0.696

MEQIFLFHLFLIAPVPAEDRTLSSFLPASGRWQGVLCVPTKERAVPAPES LSEPCHGRHPGECGTPHPLSQNRGASMTLRITALRGMYQLQVSAFVRVLH CHVAPPDVIAKMPVDKPGLGPSCWQSGGSRALFLQLTQSQDWLSFAQLVQ NLIVLMLNIYHQCSMLQLQT*

Gene function information

H-Inv ID		HIT000387640
H-Inv cluster ID		HIX0034586
Accession number		BC117350.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Conserved hypothetical protein.
Similarity category		Category: Conserved hypothetical protein(Category IV).
		Conserved hypothetical protein.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000049447
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:286094;
	KEGG GENES	KEGG GENES(286094);
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:27-May-2015

WoLF PSORT	extracellular;
Target P	signal peptide
SOSUI	membrane protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 59 .. 59 C/T rs76102487 + CDS Nonsynonymous[Ala13Val] 105 .. 105 C/A rs139026231 + CDS Synonymous[Ala28Ala] 130 .. 130 T/G rs191271641 + CDS Nonsynonymous[Cys37Gly] 178 .. 178 G/T rs7008933 + CDS AA-STOP[Glu53*] 219 .. 219 G/A rs180885131 + CDS Synonymous[Pro66Pro] 225 .. 225 G/A rs149890594 + CDS Synonymous[Pro68Pro] 310 .. 310 C/T rs139736714 + CDS Nonsynonymous[Arg97Cys] 311 .. 311 G/A rs181295694 + CDS Nonsynonymous[Arg97His] 448 .. 448 C/T rs186544210 + CDS Nonsynonymous[Leu143Phe] 471 .. 471 G/A rs75023938 + CDS Synonymous[Gln150Gln] 516 .. 516 G/A rs180954794 + CDS Nonsynonymous[Met165Ile] 518 .. 518 T/C rs147825619 + CDS Nonsynonymous[Leu166Ser] 617 .. 617 G/A rs188436897 + 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  Type Start End Strand MLT1K 297 466 - Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;