H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000341771 Accession number: DQ101108 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Similar to Ig kappa chain V-IV region; Precursor; Fragment;
 
 

Transcript original information
Accession number DQ101108.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 340[bp] (No. of exon:1)[A:84 T:76 G:85 C:95]
Devision HUM
Molecular type mRNA
Library origin Cell type mononuclear cells
Tissue type peripheral blood
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N/C-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0029781
Genomic location  G-integra Help Chromosome 2
Location 2p11.2
Position 89185367- 89185674
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl ENST00000390243; 
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000157548
Predicted CDS 1..340;  113[aa];  Orientation:+1; 
Codon Adaptation Index (CAI).

Motif information
ORF

length(113),orf(1:340) DIVMTQSPDSLAVSLGERATINCKSSQSVFYSSNNKNYLAWYQQKPEQPP KLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSS PLTFGGGTKVEIK 		a.a.
length		 InterPro Name
length(95), motif(1:95) 95 IPR007110 Immunoglobulin-like [Domain]
length(110), motif(2:111) 110 IPR013106 Immunoglobulin V-set [Domain]
length(111), motif(3:113) 111 IPR013783 Immunoglobulin-like fold [Domain]
length(106), motif(8:113) 106 IPR003599 Immunoglobulin subtype [Domain]
length(79), motif(18:96) 79 IPR003596 Immunoglobulin V-set, subgroup [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000341771
H-Inv cluster ID Locus viewHIX0029781
Accession number DQ101108.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Ig kappa chain V-IV region; Precursor; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P06312)  [Identity/coverage = 97.03%/83.47%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 2997712;  ALL; 
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ IGKV4-1
UniProt IGKV4-1
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000157548
No. of interaction 4
Interaction partner(s) HIP000030343;  HIP000050532;  HIP000071861;  HIP000108521; 
BIND NA
DIP NA
MINT MINT-4789189;  MINT-4789226; 
HPRD 07087;  15769; 
IntAct EBI-3962281; 
Database links RefSeq NA
Ensembl ENST00000390243; 
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT cytosol;  extracellular;  nuclear; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  600666;  607329;  609402; 
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name NA
Disease NA
Substance NA
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
26 .. 26 A/G rs116328981 + CDS Nonsynonymous[Asp9Gly]
40 .. 40 T/C rs72847567 + CDS Nonsynonymous[Ser14Pro]
88 .. 88 T/C rs72847569 + CDS Nonsynonymous[Phe30Leu]
95 .. 95 G/A rs78280375 + CDS Nonsynonymous[Ser32Asn]
112 .. 112 T/A/C rs7606636 + CDS
153 .. 153 G/A rs115736498 + CDS Synonymous[Lys51Lys]
154 .. 154 C/T rs112784030 + CDS Synonymous[Leu52Leu]
230 .. 230 T/A rs72847570 + CDS Nonsynonymous[Phe77Tyr]
276 .. 276 T/C rs1141252 + CDS Synonymous[Tyr92Tyr]
278 .. 278 A/T rs1141253 + CDS Nonsynonymous[Tyr93Phe]
279 .. 279 C/T rs1134821 + CDS Synonymous[Tyr93Tyr]
288 .. 288 A/G rs111711225 + CDS Synonymous[Gln96Gln]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;