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H-Invitational ID: HIT000338014 Accession number: BC104926 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Protocadherin gamma-A5; PCDH-gamma-A5; Precursor;
 
 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
11 .. 11 G/A rs192201180 + 5'UTR
129 .. 129 C/T rs200312693 + CDS Synonymous[Cys10Cys]
257 .. 257 G/A rs144886424 + CDS Nonsynonymous[Gly53Glu]
315 .. 315 G/C rs149041036 + CDS Synonymous[Thr72Thr]
343 .. 343 G/A rs184408500 + CDS Nonsynonymous[Gly82Ser]
597 .. 597 T/C rs57308563 + CDS Synonymous[Ser166Ser]
605 .. 605 G/T rs200583878 + CDS Nonsynonymous[Ser169Ile]
623 .. 623 A/G rs142073719 + CDS Nonsynonymous[Asn175Ser]
627 .. 627 G/A rs199575653 + CDS Synonymous[Leu176Leu]
651 .. 651 C/G rs199576947 + CDS Nonsynonymous[Ser184Arg]
664 .. 664 C/T rs200656228 + CDS AA-STOP[Gln189*]
667 .. 667 A/T rs201286149 + CDS AA-STOP[Lys190*]
769 .. 769 G/A rs188773052 + CDS Nonsynonymous[Gly224Ser]
811 .. 811 A/T rs199756911 + CDS Nonsynonymous[Asn238Tyr]
824 .. 824 T/G rs181194736 + CDS Nonsynonymous[Phe242Cys]
840 .. 840 C/T rs184618404 + CDS Synonymous[Tyr247Tyr]
853 .. 853 C/G rs75563633 + CDS Nonsynonymous[Pro252Ala]
908 .. 908 A/C rs75982128 + CDS Nonsynonymous[Asp270Ala]
936 .. 936 C/A rs201444039 + CDS AA-STOP[Tyr279*]
1008 .. 1008 T/C rs189137040 + CDS Synonymous[Thr303Thr]
1043 .. 1043 A/G rs199512708 + CDS Nonsynonymous[Tyr315Cys]
1078 .. 1078 C/T rs200560640 + CDS Nonsynonymous[Leu327Phe]
1155 .. 1155 G/A rs115453161 + CDS Synonymous[Leu352Leu]
1186 ^ 1187 -/G rs34496075 + CDS
1192 .. 1192 G/A rs182594355 + CDS Nonsynonymous[Val365Ile]
1199 .. 1199 C/T rs151160787 + CDS Nonsynonymous[Ala367Val]
1305 .. 1305 T/C rs73792170 + CDS Synonymous[Tyr402Tyr]
1331 .. 1331 A/C rs200032836 + CDS Nonsynonymous[Asp411Ala]
1334 .. 1334 G/C rs140294664 + CDS Nonsynonymous[Arg412Thr]
1426 .. 1426 G/A rs79266084 + CDS Nonsynonymous[Ala443Thr]
1432 .. 1432 G/C rs117201633 + CDS Nonsynonymous[Val445Leu]
1435 .. 1435 A/G rs200598354 + CDS Nonsynonymous[Asn446Asp]
1503 .. 1503 T/A rs145748099 + CDS Synonymous[Gly468Gly]
1535 .. 1535 C/T rs6882138 + CDS Nonsynonymous[Pro479Leu]
1558 .. 1558 G/T rs200109132 + CDS Nonsynonymous[Val487Phe]
1572 .. 1572 G/A rs138451800 + CDS Synonymous[Leu491Leu]
1739 .. 1739 C/T rs201085226 + CDS Nonsynonymous[Ser547Leu]
1822 .. 1822 G/C rs202185929 + CDS Nonsynonymous[Val575Leu]
1836 .. 1836 T/C rs11750908 + CDS Synonymous[Pro579Pro]
1921 .. 1921 C/T rs62378419 + CDS Synonymous[Leu608Leu]
1948 ^ 1949 -/T rs35325687 + CDS
1967 .. 1967 C/T rs187196267 + CDS Nonsynonymous[Thr623Met]
1975 .. 1975 G/A rs200201332 + CDS Nonsynonymous[Val626Met]
1992 .. 1992 C/T rs141416995 + CDS Synonymous[Ala631Ala]
2036 .. 2036 T/A rs201030376 + CDS Nonsynonymous[Val646Asp]
2099 ^ 2100 -/G rs34761299 + CDS
2102 .. 2102 T/A rs190728090 + CDS Nonsynonymous[Ile668Asn]
2206 .. 2206 G/A rs201380639 + CDS Nonsynonymous[Val703Ile]
2287 .. 2287 A/G rs202129179 + CDS Nonsynonymous[Ser730Gly]
2335 .. 2335 G/T rs181587578 + CDS Nonsynonymous[Val746Phe]
2376 .. 2376 C/T rs200161061 + CDS Synonymous[Leu759Leu]
2441 .. 2441 G/A rs202102428 + CDS Nonsynonymous[Ser781Asn]
2455 .. 2455 G/A rs200958152 + CDS Nonsynonymous[Glu786Lys]
2475 .. 2475 G/T rs202189432 + CDS Synonymous[Leu792Leu]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
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 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer