H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
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Definition*
Data source ID
---
CCDS ID
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GO name*
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H-Invitational ID:
HIT000329559
Accession number:
AB209624
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Interferon regulatory factor 1; IRF-1;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AB209624.1
CAGE tag ID
NA
EST ID
NA
Clone Number
sh02382
Experimental resources
NBRC
;
HGPD
;
Antibody (IRF1)
;
Catalog (IRF1)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
5152[bp] (No. of exon:2)[A:1227 T:1215 G:1470 C:1240]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
spleen
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
TGCTGGGCAGAAACGTGCCTGGCTTAGCAGAGGACAAACGAGTTAATCTT GCACCAGTCACTCTGGCCCAAGAAGCCTATAGCTGGTGCACTTGGGGCAA CATAGACCCTATAGACTTAGTAGCAATGATAGTATTCATAATAATAGCTA ATGCTTACTGAACACTCCCTGTGTGCCTGGCACCTGCTAAGTATGTTATT TACATTGTGTCATTTAATCCTCGCAGTAGTCCTGTGGGTTAGATCTTACT AATGTCATCATTTTCAGATAAGTAAACAGAGGCACTGAGAGGTAGATCAT AAGATCACACAAAAAGTGATGAAGCCAAGATTTGAACTTGAACGGTCTGA CTCAGAAATCTTTACTGTTAACCATAAGTGATATAATAACAGTAAGACCT TAGACTTCATATTTGTCACTGTGTCCCTACACATCCTCTGGTTTTTAATC CTCAAAATTTTGTTGGATATGTTTTCTCATTTCCGAGAAGAGAAAACTGA GGGGCAAAGAGATACAGTGACAATGCCAGGGTTACACAGTGTTCACCATC CAAGTCTAGCCCAGAGCTCCCTCAGTGGTATGACCAGGACCCCCTGTGTA AGAGCCCATGCTCCCAGGTGTCCTGAGGAGTCCTTTCTAATGGAAGAAGT TCTTACTTCCATGTGGGTGCTTACAAGCCAGAGAGAAACATCCCAGAGCT TCAAAACCAGGGCTTTGGGGGAGGGTGCCCTGTGTGGGTCCTAGCACATG TGTAACAGGCAGAGGGAGGTCTTTGTGAGCTAATAATGCTGCAGCTCATC CAAACTAGGTGTCCCTCCTGAGAGATCCAGAGTGGTCTGTTTAAGCCAGC CTCAAGATGGGTGTCCAAGCCAGATGTCAGGGGAAAAAAGGGGAAGTCAG CCTTTTCTCAGACCTGTCTGGCTGGGCAGGCCTGGGTCTCAGACTCAGCC CCAAAGTCTGTGGTCTCTGACCTGACACAGCCTTATGTGTATGTGTGTAT TGTTCAGGAGGAGATGATCTTCCAGATCCCATGGAAGCATGCTGCCAAGC ATGGCTGGGACATCAACAAGGATGCCTGTTTGTTCCGGAGCTGGGCCATT CACACAGGCCGATACAAAGCAGGGGAAAAGGAGCCAGATCCCAAGACGTG GAAGGCCAACTTTCGCTGTGCCATGAACTCCCTGCCAGATATCGAGGAGG TGAAAGACCAGAGCAGGAACAAGGGCAGCTCAGCTGTGCGAGTGTACCGG ATGCTTCCACCTCTCACCAAGAACCAGAGAAAAGGTATCCAAGGACTCTG GGTCCTTGGGAAGCCCTCAGGGAGGGAGGGTAGAAGGAGGTCAGCTGGGG CTGGAGAGCCTGCACCAAGGCTGACAGCCCGTCTGCCCCACAGAAAGAAA GTCGAAGTCCAGCCGAGATGCTAAGAGCAAGGCCAAGAGGAAGGTGAGTG TGGTCCTAAGCAGCCAGGCCTTTGGTCACCTGTGGGCCAGGGTGAGCAGT GGAAGAAATGCTAAGGTGGGCCTGGGCCTAAGCTGCTTTCTCCCTCGACA GTCATGTGGGGATTCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCT CCACTCTGCCTGATGACCACAGCAGCTACACAGTTCCAGGCTACATGCAG GACTTGGAGGTGGAGCAGGCCCTGACTCCAGGTGAGCTGGTCCAGGTCTG GCAGGAGACCCCACAGGTCAGTGGGATGACTCTTTCTCTTGGAGGCATGG TGCTGGCACATGGTGGCCCATTAGTGCAGGCTGCAGGGTTGGTCGGAGGG CGCTCGATGTCTTGCAAACTAAGAAAGCACACAACCTTGACCTGTGGCTT CTGCTGTTCCCCAGCACTGTCGCCATGTGCTGTCAGCAGCACTCTCCCCG ACTGGCACATCCCAGTGGAAGTTGTGCCGGACAGCACCAGTGATCTGTAC AACTTCCAGGTGTCACCCATGCCCTCCACCTCTGAAGGTTGGTGCTCCTG GGGCCTGGCCTGCCTGCTTGACTGTCTGGGTCCTGTGAAGGGCTTCCTGA GAGAGAAAAGATGATCAGAACTCCACCTGGCACTGAATTGATTGAGTTGG GCATTGCCCAGTCTTAGCCACCATAGGGGGAGGCAAGCGACGGGGACACT AGGAAGGCAGTTCAGAGTGGGCTGCAGTACAGTGGGGGCTGGTGAGAGGA GGGAAGGGGGCCAGGGGCTGCATTTTGGGGTGCTGGTTCTCCTTCCTCCT CTGTAGCCCAGCATCTGAGGGTGAGGAAGGAAGTAGGGTAGGGGTGGGAA GCGGCGTGGCTTCAGGGTTTGAGAGGCTGAGTCACCAGGCCAGGGTCCTG TTCTGGAATCTCTATGGCAGATAGGTCCACCGGGAGGGTGTGTGTGTGTG TGTGTGTGTCAGAGAGACAGAGAGACAGAGAAAGGGCAGGGGGATCTGGT GGGCTGGAACTGGAACTGCAGGGTGAGTGTGGCTGACTGCCAGCCAACCT CTCTGCTTTCCCCATCCACAGCTACAACAGATGAGGATGAGGAAGGGAAA TTACCTGAGGACATCATGAAGGTAAAGCCCCTTCCTACCTGGGCACTCTT GAAGTGACCGTTTCTCAGTGAGGAGAGAGAACCAGTGAAGCTTCCAAATC AGAGGATGGGTAGCTGCTGTTGTCACCTGGCTGCTTGCATTGTCCCACAA GTGCCACATTCACGTGGCTTGACTGGTGGGAAAGCCACCATGGGAAGGGA AGGCAGGTGGGAGGCCTGGCCTCTGACAGGCCGTCCTGAAGCAAGCCTTG GGGCATCAGACAGCTCTGTGAGTCAGGCACTATCAGCGATGGGTCCCTGG CCTGCATCCCCTGCCCCAACATGCCCCAGCCCTGCTAGTTCGGGAAATGC ACATCAGGCTTCAATAATCAGCCTTTAGGATCCGTTAATATGATGATGGC TTTATAGAAAAAGTTAGCAAATTATCCTCCAGGTTTTTTTTTCTGCTTCA GTTTTGAAAGTGAATATAGTTTTTGCAGCCGGGGGCAGTGGCTCATGCCT GTAATCCCAGCACTTTGGAAGGCGAAGGTGGGTGGATCACCTGAGGTCAG GAGTTTGAGACCAGCCTGACTAACATGGTGAAACCCATCTCTACCAAAAA TATAAAAATTAGCTGGGCCTGGTGGCGCATGCCTGTAATCCCAGCTACTC TGAAGGCTGAGGCAGGAGAATCGCTTGAACCTGAGAGGCGGAGGTTGCAG TGAGCTGAGATTGTGTCATTGCACTCCAGCCTGGGCAACAAGAGCAAAAC TCCATTTCAAAAAAAAGTTTTTGCAGTAGTTGTACGCCAGCTGTTCCATT AGCCCAAAAAATTGAGACATGGATGTCGTTCCTTATCTCTAGCTTTTCTA GTCATCTTTTCTTGATTTATTATGCTAACCTTTGTTTTAAGCCACATTCC CTCTTACTATGTCCTTACACAGTTGAGAGGGAAGTCGTGGAGATGCTATA CCAGAGAGTGGGTGTGAGAGGGGTGGGAAAATGAATTGAGGACCAGTGCC AACATGCATTTCTGCCTCCTCCCTCCCGGGCCCTTGTCCTGACTGCAGTG CACTTCTGCATCCTATCTGAGATTGTGAAAATGGCCAAGGGTGTGATACT GGCTGAGAGGAGCTGGCTCATTGAGGGCAGGGCCACAGGGTGAGTCTGCA CTGGAAGGGAGTTGATAGCCTCTTGCTCTTCTGTCCCCAGCTCTTGGAGC AGTCGGAGTGGCAGCCAACAAACGTGGATGGGAAGGGGTACCTACTCAAT GAACCTGGAGTCCAGCCCACCTCTGTCTATGGAGACTTTAGCTGTAAGGA GGAGCCAGAAATTGACAGCCCAGGGGGTAAGAAGGCCCTGGATCCTTATG GCTTCTTAGATGAGGGAGAACCACGTAGGGATGGAGAAAGCTTGGGGGCA GGGCCAGGGAGCAGGGCGGTAAAGCATCTGGGGTACTGACACATTGTGAA TTAGCTACGGCTGCCATGCCTTAAGGTTTGCCTGAAGCTGAGTGGATGTT TACTGCTGTGCTGGGAAGAGCAGAGGCCATGTCTATGGCCTTCAGGGGTA GGGGGAAGCACACCTGATGCCACCGTCCCCTACCCTCATACAACCTTCTT CACATCTTCTAGGGGATATTGGGCTGAGTCTACAGCGTGTCTTCACAGAT CTGAAGAACATGGATGCCACCTGGCTGGACAGCCTGCTGACCCCAGTCCG GTTGCCCTCCATCCAGGCCATTCCCTGTGCACCGTAGCAGGGCCCCTGGG CCCCTCTTATTCCTCTAGGCAAGCAGGACCTGGCATCATGGTGGATATGG TGCAGAGAAGCTGGACTTCTGTGGGCCCCTCAACAGCCAAGTGTGACCCC ACTGCCAAGTGGGGATGGGGCCTCCCTCCTTGGGTCATTGACCTCTCAGG GCCTGGCAGGCCAGTGTCTGGGTTTTTCTTGTGGTGTAAAGCTGGCCCTG CCTCCTGGGAAGATGAGGTTCTGAGACCAGTGTATCAGGTCAGGGACTTG GACAGGAGTCAGTGTCTGGCTTTTTCCTCTGAGCCCAGCTGCCTGGAGAG GGTCTCGCTGTCACTGGCTGGCTCCTAGGGGAACAGACCAGTGACCCCAG AAAAGCATAACACCAATCCCAGGGCTGGCTCTGCACTAAGAGAAAATTGC ACTAAATGAATCTCGTTCCCAAAGAACTACCCCCTTTTCAGCTGAGCCCT GGGGACTGTTCCAAAGCCAGTGAAATGTGAAGGAAAGTGGGGTCCTTCGG GGCGATGCTCCCTCAGCCTCAGAGGAGCTCTACCCTGCTCCCTGCTTTGG CTGAGGGGCTTGGGAAAAAAACTTGGCACTTTTTCGTGTGGATCTTGCCA CATTTCTGATCAGAGGTGTACACTAACATTTCCCCCGAGCTCTTGGCCTT TGCATTTATTTATACAGTGCCTTGCTCGGCGCCCACCACCCCCTCAAGCC CCAGCAGCCCTCAACAGGCCCAGGGAGGGAAGTGTGAGCGCCTTGGTATG ACTTAAAATTGGAAATGTCATCTAACCATTAAGTCATGTGTGAACACATA GGACGTGTGTAAATATGTACATTTGTCTTTTTATAAAAAGTAAATTGTTT AT
Gene structure information
H-Inv cluster ID
HIX0005159
Genomic location
Chromosome
5
Location
5q31.1
Position
131818777- 131824724
Strand
-
Possible duplicated location(s)
NA
Gene structure
2 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:3659
;
KEGG GENES
KEGG GENES(3659)
;
GeneCard
IRF1
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000155018
Predicted CDS
1375..2064; 229[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.797
QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHLWARVSSGRNAKVGL GLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQAL TPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLR KHTTLTCGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMP STSEGWCSWGLACLLDCLGPVKGFLREKR*
Gene function information
H-Inv ID
HIT000329559
H-Inv cluster ID
HIX0005159
Accession number
AB209624.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Splicing isoform
Coding potential
Protein coding;
Definition
Similar to Interferon regulatory factor 1; IRF-1;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
P10914
) [Identity/coverage = 100.0%/12.62%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
1382447
;
2726461
;
3409321
;
8438156
;
9679752
;
10094406
;
10395927
;
11244049
;
11846971
;
11846974
;
15226432
;
15489334
;
15509808
;
16932750
;
17516545
;
17942705
;
18084608
;
18497060
;
18641303
;
19404407
;
19851330
;
20049431
;
21389130
;
22200613
;
22367195
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
IRF1
HGNC aliases
NA
HGNC name
interferon regulatory factor 1
DDBJ
NA
UniProt
IRF1
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000155018
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:3659
;
KEGG GENES
KEGG GENES(3659)
;
GeneCard
IRF1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear; extracellular; cytosol;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Twilight zone
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
1
80
1if1A
3e-30
100.0
80/105
a.4.5.23
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA220418;
Affymetrix
GeneChip
HG-Focus
202531_at;
HG-U133
202531_at;
HG-U133A
202531_at;
HG-U133A_2
202531_at;
HG-U133B
NA
HG-U133_Plus_2
202531_at;
HG-U95
669_s_at;
HG-U95A
669_s_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2828595; 2828596; 2875350; 2875351; 2875352; 2875353; 2875354; 2875355; 2875356; 2875357; 2875358; 2875359; 2875360; 2875361; 2875362; 2875363; 2875364; 2875365; 2875366; 2875367; 2875368; 2875369; 2875370;
HuGeneFL
L05072_s_at;
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P41765;
Whole Human Genome Oligo Microarray:PGID247
A_23_P41765;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Disease/pathology information
Last modified:27-May-2015
Disease relation
Disease name: Gastric cancer (
137215
); Disease name: Macrocytic anemia, refractory, of 5q- syndrome (
153550
);
Related information in OMIM
OMIM ID:
147575
; Title: INTERFERON REGULATORY FACTOR 1
Co-localized orphan diseases
NA
Disease related mutation
MutationView:
147575
;
JRE-1.4.0 or later is required.Download JRE at
Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA)
Gene name
Entrez Gene ID:(3659)
Disease
Entrez Gene ID:(3659)
Substance
Entrez Gene ID:(3659)
Related H-InvDB links
DiseaseInfo Viewer
;
LEGENDA
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
39 .. 39
C/T
rs180858079
-
5'UTR
42 .. 42
G/A
rs41371350
+
5'UTR
108 ^ 109
-/C
rs36102858
-
5'UTR
154 .. 154
C/T
rs41527545
+
5'UTR
167 .. 167
C/T
rs142365706
-
5'UTR
239 .. 239
T/G
rs2070722
+
5'UTR
415 .. 415
G/A
rs62383675
-
5'UTR
485 .. 485
G/A
rs187998443
-
5'UTR
520 .. 520
A/G
rs140838953
-
5'UTR
551 .. 551
C/T
rs115894971
-
5'UTR
579 .. 579
T/C
rs143840473
-
5'UTR
661 .. 661
A/T
rs10213701
-
5'UTR
692 .. 692
C/G
rs139715683
-
5'UTR
794 .. 794
G/A
rs12657912
-
5'UTR
798 .. 798
A/G
rs10035166
-
5'UTR
832 .. 832
G/A
rs186341376
-
5'UTR
855 .. 855
A/G
rs41407246
+
5'UTR
861 ^ 862
-/CA
rs33993327
-
5'UTR
862 ^ 863
-/CA
rs35829610
-
5'UTR
863 ^ 864
-/CA
rs142117404
-
5'UTR
989 .. 989
G/T
rs199614102
-
5'UTR
1022 .. 1022
C/T
rs117282832
-
5'UTR
1119 .. 1119
G/C
rs137993322
-
5'UTR
1193 .. 1193
C/T
rs199589588
-
5'UTR
1239 .. 1239
C/T
rs146963938
-
5'UTR
1244 .. 1244
G/A
rs149276593
-
5'UTR
1265 .. 1265
C/G
rs17622685
-
5'UTR
1362 .. 1362
G/A
rs200597334
-
5'UTR
1380 .. 1380
C/T
rs113737077
-
CDS
Synonymous[Pro2Pro]
1431 .. 1431
G/A
rs200378665
-
CDS
Synonymous[Lys19Lys]
1542 .. 1542
C/T
rs201796901
-
CDS
Synonymous[Leu56Leu]
1547 .. 1547
G/A
rs116022693
-
CDS
Nonsynonymous[Arg58Gln]
1590 .. 1590
A/T
rs185307675
-
CDS
Synonymous[Gly72Gly]
1629 .. 1629
C/T
rs138606864
-
CDS
Synonymous[Tyr85Tyr]
1644 .. 1644
C/T
rs201815197
-
CDS
Synonymous[Tyr90Tyr]
1661 .. 1661
T/C
rs150089120
-
CDS
Nonsynonymous[Val96Ala]
1699 .. 1699
T/C
rs17848404
+
CDS
Nonsynonymous[Trp109Arg]
1706 .. 1706
A/G
rs9282761
+
CDS
Nonsynonymous[Glu111Gly]
1797 .. 1797
A/G
rs9282763
+
CDS
Synonymous[Gly141Gly]
1858 .. 1858
T/C
rs2070724
+
CDS
Nonsynonymous[Ser162Pro]
1875 .. 1875
A/G
rs9282762
+
CDS
Synonymous[Pro167Pro]
1899 .. 1899
C/T
rs17848410
+
CDS
Synonymous[Pro175Pro]
1928 .. 1928
C/T
rs146891501
-
CDS
Nonsynonymous[Pro185Leu]
1979 .. 1979
C/T
rs145101897
-
CDS
Nonsynonymous[Thr202Ile]
2064 .. 2064
A/C
rs10214312
-
CDS
STOP-AA[*230Cys]
2139 .. 2139
G/A
rs17848412
+
3'UTR
2142 .. 2142
G/A
rs2070725
+
3'UTR
2175 .. 2175
C/T
rs17848414
+
3'UTR
2192 .. 2192
G/T
rs2070726
+
3'UTR
2221 .. 2221
C/A
rs111296401
-
3'UTR
2272 .. 2272
T/G
rs201918473
+
3'UTR
2297 .. 2297
G/T
rs10068266
-
3'UTR
2344 .. 2344
G/A
rs79452489
-
3'UTR
2368 .. 2368
C/T
rs142423590
-
3'UTR
2372 .. 2372
T/C
rs10053046
-
3'UTR
2382 .. 2382
G/C
rs61175929
-
3'UTR
2387 ^ 2388
-/GTGTG/GTGTGTG
rs34598713
-
3'UTR
2388 ^ 2389
-/G/GTGTGTGTG
rs111906639
-
3'UTR
2406 ^ 2407
-/GTGT
rs34203943
-
3'UTR
2408 ^ 2409
-/GT
rs72126780
-
3'UTR
2409 ^ 2410
-/GT
rs142244361
-
3'UTR
2421 .. 2421
A/G
rs137941562
-
3'UTR
2434 .. 2434
G/A
rs188867044
-
3'UTR
2526 .. 2526
A/C
rs141364775
-
3'UTR
2642 .. 2642
T/C
rs111857237
-
3'UTR
2684 .. 2684
C/T
rs10068129
-
3'UTR
2742 .. 2742
G/A
rs17848418
+
3'UTR
2783 .. 2783
G/A
rs183979567
-
3'UTR
2793 .. 2793
A/G
rs191461092
-
3'UTR
2933 .. 2933
C/T
rs17622656
-
3'UTR
3031 .. 3031
G/A
rs186658090
-
3'UTR
3053 .. 3053
A/G
rs111607221
-
3'UTR
3074 .. 3074
G/A
rs145193230
-
3'UTR
3098 .. 3098
C/T
rs140260397
-
3'UTR
3106 .. 3106
T/C
rs10051145
-
3'UTR
3361 .. 3361
A/-
rs34576901
-
3'UTR
3366 .. 3366
G/A
rs143836135
-
3'UTR
3378 .. 3378
G/A
rs148975322
-
3'UTR
3506 .. 3506
G/C
rs114690554
-
3'UTR
3577 .. 3577
C/T
rs145798523
-
3'UTR
3624 .. 3624
T/G
rs56112055
-
3'UTR
3655 .. 3655
G/T
rs2070727
+
3'UTR
3755 .. 3755
G/A
rs201186445
-
3'UTR
3774 .. 3774
G/A
rs201857248
-
3'UTR
3788 .. 3788
G/A
rs199626190
-
3'UTR
3799 .. 3799
A/G
rs200736826
-
3'UTR
3839 .. 3839
T/C
rs146613421
-
3'UTR
3875 .. 3875
G/C
rs113976540
-
3'UTR
3924 .. 3924
C/T
rs184129249
-
3'UTR
3925 .. 3925
G/A
rs193125478
-
3'UTR
3953 .. 3953
G/A
rs2070728
+
3'UTR
3960 .. 3960
A/G
rs7701588
-
3'UTR
3968 .. 3968
G/A
rs149828553
-
3'UTR
4000 .. 4000
A/G
rs188983738
-
3'UTR
4001 .. 4001
T/G
rs55935432
-
3'UTR
4004 .. 4004
G/T
rs41502246
+
3'UTR
4009 .. 4009
G/T
rs2070729
+
3'UTR
4130 .. 4130
C/T
rs2070730
+
3'UTR
4131 .. 4131
T/C
rs113257045
-
3'UTR
4132 .. 4132
A/G
rs2070731
+
3'UTR
4239 .. 4239
G/A
rs142853835
-
3'UTR
4252 .. 4252
T/C
rs55746618
-
3'UTR
4324 .. 4324
C/G
rs56288038
-
3'UTR
4429 .. 4429
C/T
rs17848427
+
3'UTR
4438 .. 4438
T/C
rs190321767
-
3'UTR
4668 .. 4668
C/T
rs17848428
+
3'UTR
4715 .. 4715
G/A
rs34850771
+
3'UTR
4731 .. 4731
C/A/T
rs17848429
+
3'UTR
4733 .. 4733
C/G
rs35642338
+
3'UTR
4796 .. 4796
T/C
rs17848431
+
3'UTR
4799 .. 4799
G/A
rs35178118
+
3'UTR
4804 .. 4804
G/A
rs839
+
3'UTR
4940 .. 4940
C/A
rs17848433
+
3'UTR
4982 .. 4982
C/T
rs17848434
+
3'UTR
5028 .. 5028
G/C
rs145347120
-
3'UTR
5115 .. 5115
A/G
rs115945411
-
3'UTR
5125 .. 5125
G/T
rs139911206
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MIR
140
385
-
MIRb
444
539
-
AluSq2
3028
3316
+
L3b
3436
3482
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;