H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
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H-Invitational ID:
HIT000328107
Accession number:
Z75940
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to T-cell receptor alpha chain V region HPB-MLT; Precursor; Fragment;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
Z75940.1
CAGE tag ID
NA
EST ID
NA
Clone Number
P6_20
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
337[bp] (No. of exon:3)[A:98 T:77 G:79 C:83]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
CD8+ T cells
Tissue type
peripheral blood
Develpmental stage
NA
Sequence quality information
CDS feature
N/C-truncated
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
Truncation;
Notes
NA
TGTGACTCTGGACTGCACATATGACACCAGTGATCCAAGTTATGGTCTAT TCTGGTACAAGCAGCCCAGCAGTGGGGAAATGATTTTTCTTATTTATCAG GGGTCTTATGACCAGCAAAATGCAACAGAAGGTCGCTACTCATTGAATTT CCAGAAGGCAAGAAAATCCGCCAACCCTGTCATCTCCGCTTCACAACTGG GGGACTCAGCAATGTACTTCTGTGCAATGAGAGAGCCATACACGGGCAGG AGAGCACTTACTTTTGGGAGTGGAACAAGACTCCAAGTGCAACCAAATAT CCAGAACCCTGACCCTGCCGTGTACCAGCTGAGAGAC
Gene structure information
H-Inv cluster ID
HIX0018085
Genomic location
Chromosome
14
Location
14q11.2
Position
22392591- 23016487
Strand
+
Possible duplicated location(s)
NA
Gene structure
3 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000132969
Predicted CDS
2..337; 112[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.776
VTLDCTYDTSDPSYGLFWYKQPSSGEMIFLIYQGSYDQQNATEGRYSLNF QKARKSANPVISASQLGDSAMYFCAMREPYTGRRALTFGSGTRLQVQPNI QNPDPAVYQLRD
Motif information
a.a.
length
InterPro
Name
97
IPR013783
Immunoglobulin-like fold [Domain]
96
IPR013106
Immunoglobulin V-set domain [Domain]
87
IPR007110
Immunoglobulin-like domain [Domain]
Gene function information
H-Inv ID
HIT000328107
H-Inv cluster ID
HIX0018085
Accession number
Z75940.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to T-cell receptor alpha chain V region HPB-MLT; Precursor; Fragment;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
P04436
) [Identity/coverage = 57.447%/71.76%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
6440030
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000132969
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
protein binding (
GO:0005515
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear; cytosol; extracellular;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsB031110;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
NA
HG-U95
31710_at; 432_s_at;
HG-U95A
31710_at; 432_s_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3528270; 3528271; 3528588;
HuGeneFL
K02777_s_at;
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
32 .. 32
G/A
rs146016436
+
CDS
Nonsynonymous[Asp11Asn]
36 .. 36
C/A
rs10140810
+
CDS
Nonsynonymous[Pro12Gln]
39 .. 39
G/T
rs186083191
+
CDS
Nonsynonymous[Ser13Ile]
49 .. 49
A/C
rs17197613
+
CDS
Synonymous[Leu16Leu]
64 .. 64
G/C
rs35290879
+
CDS
Nonsynonymous[Gln21His]
109 .. 109
T/C
rs148614554
+
CDS
Synonymous[Tyr36Tyr]
113 .. 113
C/G
rs8021861
+
CDS
Nonsynonymous[Gln38Glu]
128 .. 128
G/A
rs73595132
+
CDS
Nonsynonymous[Glu43Lys]
170 .. 170
G/A
rs17197620
+
CDS
Nonsynonymous[Ala57Thr]
184 .. 184
C/T
rs117541445
+
CDS
Synonymous[Ile61Ile]
217 .. 217
C/T
rs8008040
+
CDS
Synonymous[Tyr72Tyr]
243 .. 243
C/T
rs3811196
-
CDS
Nonsynonymous[Thr81Met]
262 .. 262
T/-
rs34543620
+
CDS
307 .. 307
C/G
rs56298757
+
CDS
Nonsynonymous[Asn102Lys]
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;