H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000323271 Accession number: X72429 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Similar to Ig kappa chain V-II region GM607; Precursor; Fragment;
 
 

Transcript original information
Accession number X72429.1
CAGE tag ID NA
EST ID NA
Clone Number II.11
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 371[bp] (No. of exon:2)[A:82 T:91 G:97 C:101]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type spleen
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature C-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0021121
Genomic location  G-integra Help Chromosome 2
Location 2p11.2
Position 89160079- 89521493
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl ENST00000390237;  ENST00000390238;  ENST00000390239;  ENST00000390240;  ENST00000390241;  ENST00000390242;  ENST00000390252;  ENST00000390256;  ENST00000390264;  ENST00000390265;  ENST00000418209;  ENST00000429992;  ENST00000430694;  ENST00000434790;  ENST00000442736;  ENST00000448155;  ENST00000452230;  ENST00000453184;  ENST00000464162;  ENST00000465170;  ENST00000468494;  ENST00000473726;  ENST00000479981;  ENST00000480492;  ENST00000482769;  ENST00000483158;  ENST00000484817;  ENST00000490686;  ENST00000492167;  ENST00000493819;  ENST00000495489;  ENST00000496168;  ENST00000498435;  ENST00000498574;  ENST00000509129;  ENST00000518305;  ENST00000521304;  ENST00000521705;  ENST00000523070; 
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000349405
Predicted CDS 4..371;  122[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.672

Motif information
ORF

length(122),orf(4:371) MLWVSGSSGDIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYDYLDWY LQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGIY YCMQALQTPSVTSAKGHDWRLN 		a.a.
length		 InterPro Name
length(97), motif(1:97) 97 IPR013783 Immunoglobulin-like fold [Domain]
length(104), motif(9:112) 104 IPR007110 Immunoglobulin-like [Domain]
length(96), motif(11:106) 96 IPR013106 Immunoglobulin V-set [Domain]
length(99), motif(17:115) 99 IPR003599 Immunoglobulin subtype [Domain]
length(78), motif(27:104) 78 IPR003596 Immunoglobulin V-set, subgroup [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000323271
H-Inv cluster ID Locus viewHIX0021121
Accession number X72429.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Ig kappa chain V-II region GM607; Precursor; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P06309)  [Identity/coverage = 94.017%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 6325927;  ALL; 
Gene family/group Gene family H-Inv gene family/group ID HIF0000001
Gene family/group name Immunoglobulin (Ig).
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000349405
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl ENST00000390237;  ENST00000390238;  ENST00000390239;  ENST00000390240;  ENST00000390241;  ENST00000390242;  ENST00000390252;  ENST00000390256;  ENST00000390264;  ENST00000390265;  ENST00000418209;  ENST00000429992;  ENST00000430694;  ENST00000434790;  ENST00000442736;  ENST00000448155;  ENST00000452230;  ENST00000453184;  ENST00000464162;  ENST00000465170;  ENST00000468494;  ENST00000473726;  ENST00000479981;  ENST00000480492;  ENST00000482769;  ENST00000483158;  ENST00000484817;  ENST00000490686;  ENST00000492167;  ENST00000493819;  ENST00000495489;  ENST00000496168;  ENST00000498435;  ENST00000498574;  ENST00000509129;  ENST00000518305;  ENST00000521304;  ENST00000521705;  ENST00000523070; 
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT cytosol;  nuclear;  peroxisome;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 214768_x_at; 
HG-U133A 214768_x_at; 
HG-U133A_2 214768_x_at; 
HG-U133B NA
HG-U133_Plus_2 214768_x_at; 
HG-U95 31319_at;  83088_s_at; 
HG-U95A 31319_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 83088_s_at; 
HG-U95Av2 NA
HuEx-1_0 2493120;  2493229;  2493230;  2493232;  2493234;  2494830;  2563900;  2563961;  2563963;  2563981;  3951641; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  600666;  607329;  609402; 
Disease related mutation
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name NA
Disease NA
Substance NA
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
32 .. 32 A/G rs11546063 + CDS Nonsynonymous[Asp10Gly]
49 .. 49 T/C rs441602 + CDS Nonsynonymous[Ser16Pro]
114 .. 114 C/T rs11546062 + CDS Synonymous[Ser37Ser]
120 .. 120 G/C rs3747638 + CDS Synonymous[Leu39Leu]
198 .. 198 T/C rs11546096 + CDS Synonymous[Gly65Gly]
203 .. 203 A/G rs11546095 + CDS Nonsynonymous[Asn67Ser]
228 .. 228 G/A rs11546093 + CDS Synonymous[Arg75Arg]
248 .. 248 G/A rs11546092 + CDS Nonsynonymous[Gly82Asp]
267 .. 267 A/G rs11546091 + CDS Synonymous[Lys88Lys]
272 .. 272 G/C rs11546094 + CDS Nonsynonymous[Ser90Thr]
339 .. 339 T/C rs114105515 - CDS Synonymous[Thr112Thr]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;