H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000301924 Accession number: CR622729 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Similar to Thy-1 membrane glycoprotein; CDw90; Thy-1 antigen; AltName: CD_antigen=CD90; Precursor;
 
 

Transcript original information
Accession number CR622729.1
CAGE tag ID NA
EST ID NA
Clone Number CS0DI011YC19
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (THY1) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (THY1);
Sequence data provider NA
Annotation project NA
Length of cDNA 1385[bp] (No. of exon:2)[A:293 T:293 G:377 C:422]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type Placenta Cot 25-normalized
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0010195
Genomic location  G-integra Help Chromosome 11
Location 11q23.3
Position 119288914- 119290828
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NM_006288; 
Ensembl ENST00000284240;  ENST00000524659;  ENST00000524970;  ENST00000527590;  ENST00000528295;  ENST00000528522;  ENST00000532974;  ENST00000533840; 
Entrez Gene Entrez Gene ID:7070; 
KEGG GENES KEGG GENES(7070); 
GeneCard GeneCardTHY1;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000187440
Predicted CDS 2..181;  59[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.797

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000301924
H-Inv cluster ID Locus viewHIX0010195
Accession number CR622729.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Thy-1 membrane glycoprotein; CDw90; Thy-1 antigen; AltName: CD_antigen=CD90; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P04216)  [Identity/coverage = 100.0%/36.65%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 2864690;  7683034;  10944468;  15489334;  17974005;  19159218;  19349973;  ALL; 
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol THY1
HGNC aliases NA
HGNC name Thy-1 cell surface antigen
DDBJ NA
UniProt THY1
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000187440
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_006288; 
Ensembl ENST00000284240;  ENST00000524659;  ENST00000524970;  ENST00000527590;  ENST00000528295;  ENST00000528522;  ENST00000532974;  ENST00000533840; 
Entrez Gene Entrez Gene ID:7070; 
KEGG GENES KEGG GENES(7070); 
GeneCard GeneCardTHY1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT mitochondria;  cytosol;  extracellular;  plasma membrane;  Other; 
Target P Not predicted
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene AGhsA020421;  AGhsC021111; 
Affymetrix
GeneChip		 HG-Focus 208850_s_at; 
HG-U133 208850_s_at;  208851_s_at;  213869_x_at; 
HG-U133A 208850_s_at;  208851_s_at;  213869_x_at; 
HG-U133A_2 208850_s_at;  208851_s_at;  213869_x_at; 
HG-U133B NA
HG-U133_Plus_2 208850_s_at;  208851_s_at;  213869_x_at; 
HG-U95 39395_at; 
HG-U95A 39395_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3352207;  3352208;  3352209;  3394416;  3394417;  3394418;  3394419;  3394420;  3394421; 
HuGeneFL M11749_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P36364;  A_23_P47756; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P36364; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  604499;  607967;  609270;  609470;  611010; 
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(7070)
Disease Entrez Gene ID:(7070)
Substance Entrez Gene ID:(7070)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
3 .. 3 C/T rs45441500 - CDS Nonsynonymous[Thr1Met]
46 .. 46 C/A rs11546391 + CDS Synonymous[Ser15Ser]
52 .. 52 C/T rs111763470 - CDS Synonymous[Asn17Asn]
265 .. 265 C/G rs1054735 + 3'UTR
315 .. 315 G/C rs111339732 - 3'UTR
380 .. 380 C/A rs112225059 - 3'UTR
456 .. 456 G/A rs12291644 - 3'UTR
529 .. 529 G/T rs13770 - 3'UTR
655 .. 655 C/G rs114912758 - 3'UTR
946 .. 946 G/A rs112627114 - 3'UTR
1047 .. 1047 C/T rs1055370 + 3'UTR
1113 .. 1113 C/T rs1064070 + 3'UTR
1186 .. 1186 C/T rs11546395 - 3'UTR
1224 .. 1224 C/T rs113417916 - 3'UTR
1348 .. 1348 A/C rs1055922 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;