H-InvDB x AHG DB
Transcript view
H-InvDB_8.3 released on March 26, 2013.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000297289 Accession number: CR618094 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Hypothetical short protein.
 
 

Transcript original information
Accession number CR618094.1
CAGE tag ID NA
EST ID NA
Clone Number CS0DI069YJ22
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (KIAA0040) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (KIAA0040);
Sequence data provider NA
Annotation project NA
Length of cDNA 778[bp] (No. of exon:1)[A:210 T:201 G:154 C:213]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type Placenta Cot 25-normalized
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001352
Genomic location  G-integra Help Chromosome 1
Location 1q25.1
Position 175126670- 175127447
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NM_014656NM_001162893NM_001162894NM_001162895
Ensembl ENST00000423313ENST00000444639ENST00000545251ENST00000546143
Entrez Gene Entrez Gene ID:9674
KEGG GENES KEGG GENES(9674)
GeneCard GeneCardKIAA0040*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000054432
Predicted CDS 270..413;  47[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.788

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000297289
H-Inv cluster ID Locus viewHIX0001352
Accession number CR618094.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol KIAA0040
HGNC aliases NA
HGNC name KIAA0040
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000054432
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_014656NM_001162893NM_001162894NM_001162895
Ensembl ENST00000423313ENST00000444639ENST00000545251ENST00000546143
Entrez Gene Entrez Gene ID:9674
KEGG GENES KEGG GENES(9674)
GeneCard GeneCardKIAA0040*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT extracellular;  mitochondria; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 203143_s_at; 
HG-U133A 203143_s_at; 
HG-U133A_2 203143_s_at; 
HG-U133B NA
HG-U133_Plus_2 203143_s_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2368291;  2444844; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  115665116600155600600975605225605606606788606852606928607317607671608543608553608995610320612367612596
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(9674)
Disease Entrez Gene ID:(9674)
Substance Entrez Gene ID:(9674)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
53 .. 53 C/T rs116108864 - 5'UTR
58 .. 58 A/C rs78666556 - 5'UTR
159 .. 159 G/A rs12042949 - 5'UTR
313 .. 313 C/T rs75007426 - CDS Nonsynonymous[Pro15Leu]
456 .. 456 T/C rs74126929 - 3'UTR
492 .. 492 G/C rs1804094 + 3'UTR
603 .. 603 A/G rs1057285 + 3'UTR
640 .. 640 G/C rs74126928 - 3'UTR
727 .. 727 A/G rs6929 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer