H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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H-Invitational ID: HIT000277526 Accession number: CR598331 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Hypothetical short protein.

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number CR598331.1 CAGE tag ID NA EST ID NA Clone Number CS0DD006YJ10 Experimental resources   NBRC ; HGPD ; Antibody (YWHAG) ; Catalog (YWHAG); Sequence data provider NA Annotation project NA Length of cDNA 914[bp] (No. of exon:1)[A:244 T:328 G:200 C:142] Devision HTC Molecular type mRNA Library origin Cell type NA Tissue type Neuroblastoma Cot 50-normalized Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

CTTTCCTTAGGAGGCCCCCTCCTCACGCTAGAGTAAAAGTCCCAGTTAAG TGAAGCCTACCAGAAGAACTAGTAGAAGAAGCTTTGCCGCTTTTGTGCCT CTCACAGGCGCCTAAAGTCATTGCCATGGGAGGAAGACGATTTGGGGGGG GAGGGGGGGGGGGGCAGGGTAGGTGGGGCTTTCCCTAATTTATCTTCATG TCCAGTGAGCAGTGTTGCGTTTTTCCTTGTAGCATTTGGAAATGATTTAC TGGAATTACAAAACCTATTTTTCCTTTAAATTTCAGCTTTGGCTCTGGCT GCTTTTTAGAATAATGCAAGATAAAAATCACACCTGAGGGCTGAAAACGG AGAGGGAATGGGAGACTTGATATTTAAGCAGCTTGAATGGTTTTTCTTTT CTTTATTTTTAAAGAAATGCACTTGCCTATGATACTGTCTCTCCAGTGAA ATGATTACTCCTCCATTACTCTATTGATACAATATTGTGCATGCTAGTGT TGTATTTCTATACAGTAGCTTGAAATTGATTAACTTATACTGTAGGTGTT ATGTATTCCTATGACAAAAAAAATTAAGTCTTCAAATTTTTTAAAGGTTT TTTTTTTTTAATTTAATTTTTCCTTTTGGGGGTAAAGTTTGCTCTACCAA ATAGTGATTGTAACAAATTGATCTGTTTTGGATGTTGCTATAGTGACATG CAGTTATATATTTTGTTTTTAAAAGGGGGGGAGCAAAAGAAACACCAGTG TTAGCTTAATCTTAATGTCTGGTGTTTGTCATGGTGAAATTATAACTATT ACAGTGTTGGAGAACAACAAATATGTTCTCTGAATGAGCCTTTGTGCTTT TTGTCATGTTATGCAGTGAACTATTTTTAAGGTCTAATCAGTGATTATTT TTCCAGCTCCGTGT

Gene structure information

H-Inv cluster ID		HIX0006789
Genomic location	Chromosome	7
	Location	7q11.23
	Position	75956236- 75957149
	Strand	-
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NM_012479;
	Ensembl	ENST00000307630;  ENST00000453207;  ENST00000536755;
	Entrez Gene	Entrez Gene ID:7532;
	KEGG GENES	KEGG GENES(7532);
	GeneCard	YWHAG;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000159478 Predicted CDS 242..337;  31[aa];  Orientation:+2;  Codon Adaptation Index (CAI). 0.788

MIYWNYKTYFSFKFQLWLWLLFRIMQDKNHT*

Gene function information

H-Inv ID		HIT000277526
H-Inv cluster ID		HIX0006789
Accession number		CR598331.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Hypothetical short protein.
Similarity category		Category: Hypothetical short protein(Category VI).
		Hypothetical short protein.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	HIF0000119
	Gene family/group name	14-3-3 protein (IPR000308).
	Evidence motif (InterPro) ID	IPR000308
Gene symbol/name	HGNC symbol	YWHAG
	HGNC aliases	NA
	HGNC name	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000159478
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_012479;
	Ensembl	ENST00000307630;  ENST00000453207;  ENST00000536755;
	Entrez Gene	Entrez Gene ID:7532;
	KEGG GENES	KEGG GENES(7532);
	GeneCard	YWHAG;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		14-3-3 protein (IPR000308). Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	cytosol;  mitochondria;  extracellular;  nuclear;
Target P	signal peptide
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	222985_at;
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	222985_at;
		HG-U133_Plus_2	222985_at;
		HG-U95	44862_at;  63282_f_at;  65826_at;  67256_at;
		HG-U95A	NA
		HG-U95B	44862_at;
		HG-U95C	63282_f_at;  65826_at;
		HG-U95D	NA
		HG-U95E	67256_at;
		HG-U95Av2	NA
		HuEx-1_0	3009423;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	NA
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:NA Title:NA
Co-localized orphan diseases		OMIM ID:  605635;
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	Entrez Gene ID:(7532)
	Disease	Entrez Gene ID:(7532)
	Substance	Entrez Gene ID:(7532)
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 61 .. 61 C/T rs112298062 - 5'UTR 88 .. 88 C/T rs111909239 - 5'UTR 153 .. 153 G/- rs71085403 - 5'UTR 153 .. 155 GGG/- rs77704559 - 5'UTR 163 ^ 164 -/G rs72226904 - 5'UTR 489 .. 489 G/A rs61680720 - 3'UTR 577 .. 577 A/T rs11541903 + 3'UTR 596 ^ 597 -/T rs71722031 - 3'UTR 598 .. 600 TTT/- rs76457232 - 3'UTR 606 .. 606 T/- rs71810596 - 3'UTR 609 .. 609 T/- rs71636412 - 3'UTR 610 .. 611 AA/- rs71795765 - 3'UTR 823 .. 823 A/G rs115737035 - 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;