H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000269704 Accession number: CR590509 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number CR590509.1 CAGE tag ID NA EST ID NA Clone Number CS0DJ001YD07 Experimental resources   NBRC ; HGPD ; Antibody (ACBD3) ; Catalog (ACBD3); Sequence data provider NA Annotation project NA Length of cDNA 1785[bp] (No. of exon:1)[A:525 T:648 G:325 C:287] Devision HTC Molecular type mRNA Library origin Cell type NA Tissue type T cells (Jurkat cell line) Cot 10-normalized Develpmental stage NA

Sequence quality information CDS feature N-truncated Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

CGGGACTGTCATGAGGAGGTGTATGCTGGCAGCCATCAATATCCAGGGAG AGGAGTCTATCTCCTCAAGTTTGACAACTCCTACTCTTTGTGGCGGTCAA AATCAGTCTACTACAGAGTCTATTATACTAGATAAAAATGTTGTTACAAA GTCTGGAGTCTAGGGTTGGGCAGAAGATGACATTTAATTTGGAAATTTCT TTTTACTTTTGTGGAGCATTAGAGTCACAGTTTACCTTATTGATATTGGT CTGATGGTTTGTGAACTCTTGCTGGGAATCAAAATTTCCTTGAGACTCTT TAGCATTCATACTTTGGGGTTAAAGGAGATTCCTCAGACTCATCCAGCCC TTGGGTGCTGACCAGCAGAGTCACTAGTGGATGCTGAAGTTACATGAGCT ACATGTTAAATATTTAAAGTCTCCAAAATAAAACACCCCAACGTTGACCT TACCCGGCTGATGGTTAGCCCCTTGCTGCCTGCTCCATGTGTCTTATGAG AGCCCGTAGTTACAGTGTCCTCTAATTTGAAATCCATAAGTTAACAAGTC TATATCAGGTGCAGCTGGCTTTGATTAAAGGCCATTTTTAAAACTTAAAA ACTCAACACCTCACAGATTATAATAGAAAAAGAAATGGCCTCAGTTTGAT CTCGTTCAGAATGACCCAGATTGTTTCTGCTTTGGGTGCAGCTGTTTAGT TCAGAGTTATATTACAGAGAATTATTTTCTGAGATAATCTTAAACTAGAA TGTTCAAAACTAATTGATAATTGAAGTATCAAGATACGTAGAACACCTCA GAGATTTTTCTTCAGGAACTTCCACAAACTTTGAATCCTTGTATCTTTAT TTGGTATTCATACTACTAGTAGCAAAATACAGGTTTTTTGTTTTGTTTTG TTTTGTTTTGGCTTCATAGAGTATCTCAAATTGAAACTTTTCTGCACAAA GAATAAAATTAAGGATTTTATAAACTCAAATTGGCACCTACTGAATTAAA ATACATAAAATCATTTAAATATAATTCAGCATATGGGAAGTAACATTGCA CTAATATGGAAATCACTGCCAGAGACAGTCTATTTTCTTTTAATTTGTTA CTACTTAGTCACAAACCCCACATTATTCCAGTTTGGAATTACTTATTAAG GAGAATTGGAAATACATATGCCCATGCTTAAATTTTATAGCTTTAATTTG TGTTATTTCTTTATTGACGGGAAGAGGTACATCTTTTTTTCCTTACTGAA AACAAATATGGATTAATTGCCTCAAATTTGTATAAGTGATTGGCTAGTGA TTCTTGTTTTCAGAAGGGAGAGTGGTATAGATAGAAAATGACAAAGATGG CAATATACACTTAATGTTGTTATTGTATGTTGTTACTGAAGTACTTAGAT TTTTAAAATTTCAAATCCTAAATCACTTCTTGTAGGAGGGTTTTCATTAA CTGCAGTATATACAGTTCACTACATATGGGTTGTTTGAGTTTTTTGTGTG CTGTATTTCTTTCTGTTTTTTAATACCTGGTTTTGTACATATCTAACTCT GTTCTCTTTTGGTTGTTCAGAAACTGGATTTTTTTTTTCTTAAGCAGTGC TTAATTTGTGTTTTTTAATTTTGATTCAGAAGTAGTCCCAGCTCATAGGT GTTCATACTGTTACATCCAGAACATTTGTCAGGCTCTCTGTCAGCTTTCA TGTACATATGGTATAGAAACCATGGAGTTAGGCACTTCCTGGATTTTTTT TTTATGAGAAAAATACTGTATTTAAAATGTAAAAT

Gene structure information

H-Inv cluster ID		HIX0001643
Genomic location	Chromosome	1
	Location	1q42.12
	Position	226332661- 226334445
	Strand	-
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NM_022735;
	Ensembl	ENST00000366812;  ENST00000464927;
	Entrez Gene	Entrez Gene ID:64746;
	KEGG GENES	KEGG GENES(64746);
	GeneCard	ACBD3;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000123770 Predicted CDS 1..135;  44[aa];  Orientation:+1;  Codon Adaptation Index (CAI). 0.715

RDCHEEVYAGSHQYPGRGVYLLKFDNSYSLWRSKSVYYRVYYTR*

Motif information

	a.a. length	InterPro	Name
	41	IPR009038	GOLD [Domain]

Gene function information

H-Inv ID		HIT000269704
H-Inv cluster ID		HIX0001643
Accession number		CR590509.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Similar to Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q8BMP6)  [Identity/coverage = 100.0%/8.38%] to Mus musculus (Mouse). protein.
Experimental evidence		Protein evidence
PubMed ID		11731621;  12711385;  16141072;  ALL;
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	ACBD3
	HGNC aliases	"golgi complex associated protein 1, 60kDa", "acyl-Coenzyme A binding domain containing 3"
	HGNC name	acyl-CoA binding domain containing 3
	DDBJ	NA
	UniProt	Acbd3
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000123770
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_022735;
	Ensembl	ENST00000366812;  ENST00000464927;
	Entrez Gene	Entrez Gene ID:64746;
	KEGG GENES	KEGG GENES(64746);
	GeneCard	ACBD3;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	nuclear;  cytosol;  extracellular;  Other;
Target P	Other
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		AGhsC010601;
	Affymetrix GeneChip	HG-Focus	202324_s_at;
		HG-U133	202324_s_at;
		HG-U133A	202324_s_at;
		HG-U133A_2	202324_s_at;
		HG-U133B	NA
		HG-U133_Plus_2	202324_s_at;
		HG-U95	36827_at;
		HG-U95A	36827_at;
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2383108;  2458704;  2458705;  2458706;  2458707;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	A_24_P171182;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:NA Title:NA
Co-localized orphan diseases		OMIM ID:  115665;  116600;  155600;  600975;  605225;  605606;  606788;  606852;  606928;  607317;  607671;  608543;  608553;  608995;  610320;  612367;  612596;
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	Entrez Gene ID:(64746)
	Disease	Entrez Gene ID:(64746)
	Substance	Entrez Gene ID:(64746)
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 18 .. 18 G/T rs3211100 + CDS Nonsynonymous[Glu6Asp] 79 .. 79 T/C rs113333885 - CDS Nonsynonymous[Ser27Pro] 156 .. 156 G/A rs41304002 - 3'UTR 162 .. 162 A/T rs1062716 + 3'UTR 361 .. 361 A/G rs111803808 - 3'UTR 517 .. 517 G/A rs61835249 - 3'UTR 680 .. 680 C/A rs61835248 - 3'UTR 896 .. 900 TTTTG/- rs72264515 - 3'UTR 907 .. 907 T/C rs79279293 - 3'UTR 1082 .. 1082 A/G rs41314288 - 3'UTR 1246 .. 1246 C/T rs41304004 - 3'UTR 1453 .. 1453 G/A rs1043641 + 3'UTR 1743 ^ 1744 -/T rs35794165 - 3'UTR 1752 ^ 1753 -/T rs71746173 - 3'UTR  Microsatellite (Short Tandem Repeat, STR) Location Variation Strand 886..910 (ttttg)5 +  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;