H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
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H-Invitational ID:
HIT000268352
Accession number:
CR533504
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Protein FAM49A.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
CR533504.1
CAGE tag ID
NA
EST ID
NA
Clone Number
RZPDo834D0719D
Experimental resources
NBRC
;
HGPD
;
Antibody (FAM49A)
;
Catalog (FAM49A)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1138[bp] (No. of exon:10)[A:355 T:277 G:246 C:260]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
Truncation;
Notes
NA
ATGGGAAACCTGCTCAAAGTCCTTACCAGGGAAATTGAAAACTATCCACA CTTTTTCCTGGATTTTGAAAATGCTCAGCCTACAGAAGGAGAGAGAGAAA TCTGGAACCAGATCAGCGCCGTCCTTCAGGATTCTGAGAGCATCCTTGCA GACCTGCAGGCTTACAAAGGCGCAGGCCCAGAGATCCGAGATGCAATTCA AAATCCCAATGACATTCAGCTTCAAGAAAAAGCTTGGAATGCGGTGTGCC CTCTTGTTGTGAGGCTAAAGAGATTTTACGAGTTTTCCATTAGACTAGAA AAAGCTCTTCAGAGTTTATTGGAATCTCTGACTTGTCCACCCTACACACC AACCCAACACCTGGAAAGGGAACAGGCCCTGGCAAAGGAGTTTGCCGAAA TTTTACATTTTACCCTTCGATTCGATGAGCTGAAGATGAGGAACCCGGCT ATTCAGAATGACTTCAGCTACTACAGAAGAACAATCAGTCGCAACCGCAT CAACAACATGCACCTAGACATTGAGAATGAAGTCAATAATGAGATGGCCA ATCGAATGTCCCTCTTCTATGCAGAAGCCACGCCAATGCTGAAAACCCTT AGCAATGCCACAATGCACTTTGTCTCTGAAAACAAAACTCTGCCAATAGA GAACACCACAGACTGCCTCAGCACAATGACAAGTGTCTGTAAAGTCATGC TGGAAACTCCGGAGTACAGAAGTAGGTTTACGAGTGAAGAGACCCTGATG TTCTGCATGAGGGTGATGGTGGGAGTCATCATCCTCTATGACCATGTCCA CCCTGTGGGAGCTTTCTGCAAGACATCCAAGATCGATATGAAAGGCTGCA TAAAAGTTTTGAAGGAGCAGGCCCCAGACAGTGTGGAGGGGCTGCTAAAT GCCCTCAGGTTCACTACAAAGCACTTGAACGATGAATCAACTTCCAAACA GATTCGAGCAATGCTTCAGTAGAGCTCTGCTCAAAGAAGAGGATCTATGT GCTGACCTCAGAAGATGTATATGTTTACATAATTTAATACAGATTGATGT TAATACTTGTGTATTTACATAACCGTTTCCTTCTTGTCACTGAAATATAT GGACCTTAATTTGTATCCTGACTGAGTCAACCCAGCAG
Gene structure information
H-Inv cluster ID
HIX0001843
Genomic location
Chromosome
2
Location
2p24.2
Position
16734038- 16769387
Strand
-
Possible duplicated location(s)
NA
Gene structure
10 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81553
;
KEGG GENES
KEGG GENES(81553)
;
GeneCard
FAM49A
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000058708
Predicted CDS
1..972; 323[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.773
Database links
RefSeq
NP_110424
;
UniProt
Q17QT7
;
Q5R6L2
;
Q9H0Q0
;
CCDS
CCDS1688
;
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILA DLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLE KALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPA IQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTL SNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLM FCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLN ALRFTTKHLNDESTSKQIRAMLQ*
Motif information
a.a.
length
InterPro
Name
322
IPR009828
Protein of unknown function DUF1394 [Family]
304
IPR009828
Protein of unknown function DUF1394 [Family]
Gene function information
H-Inv ID
HIT000268352
H-Inv cluster ID
HIX0001843
Accession number
CR533504.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Protein FAM49A.
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
NP_110424
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
FAM49A
HGNC aliases
NA
HGNC name
family with sequence similarity 49, member A
DDBJ
DKFZP566A1524
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000058708
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:81553
;
KEGG GENES
KEGG GENES(81553)
;
GeneCard
FAM49A
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
cytosol; cytoskeleton; nuclear; peroxisome;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsB240902;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
208092_s_at;
HG-U133A
208092_s_at;
HG-U133A_2
208092_s_at;
HG-U133B
NA
HG-U133_Plus_2
208092_s_at;
HG-U95
35143_at;
HG-U95A
35143_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2541718; 2541720; 2541723; 2541724; 2541726; 2541728; 2541729; 2541730; 2541732; 2541736;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P21560;
Whole Human Genome Oligo Microarray:PGID247
A_23_P21560;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
279 .. 279
C/T
rs199574540
-
CDS
Synonymous[Tyr93Tyr]
288 .. 288
C/T
rs149244503
-
CDS
Synonymous[Ser96Ser]
324 .. 324
A/C
rs150652954
-
CDS
Nonsynonymous[Glu108Asp]
371 .. 371
A/G
rs71447258
-
CDS
Nonsynonymous[Glu124Gly]
419 .. 419
G/A
rs146120289
-
CDS
Nonsynonymous[Arg140Gln]
472 .. 472
T/C
rs1139966
+
CDS
Nonsynonymous[Tyr158His]
494 .. 494
A/T
rs138219641
-
CDS
Nonsynonymous[Asn165Ile]
496 .. 496
C/T
rs140297141
-
CDS
Nonsynonymous[Arg166Cys]
675 .. 675
A/G
rs143731081
-
CDS
Synonymous[Thr225Thr]
837 .. 837
T/C
rs202029542
-
CDS
Synonymous[Asp279Asp]
927 .. 927
G/A
rs146795138
-
CDS
Synonymous[Leu309Leu]
975 .. 975
C/T
rs201324134
-
3'UTR
983 .. 983
A/T
rs187539517
-
3'UTR
1023 .. 1023
G/A
rs13404748
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;