H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000268352 Accession number: CR533504 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Protein FAM49A.
 
 

Transcript original information
Accession number CR533504.1
CAGE tag ID NA
EST ID NA
Clone Number RZPDo834D0719D
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (FAM49A) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (FAM49A);
Sequence data provider NA
Annotation project NA
Length of cDNA 1138[bp] (No. of exon:10)[A:355 T:277 G:246 C:260]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001843
Genomic location  G-integra Help Chromosome 2
Location 2p24.2
Position 16734038- 16769387
Strand -
Possible duplicated location(s) NA
Gene structure 10 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81553
KEGG GENES KEGG GENES(81553)
GeneCard GeneCardFAM49A*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000058708
Predicted CDS 1..972;  323[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.773
Database links RefSeq NP_110424
UniProt Q17QT7Q5R6L2Q9H0Q0
CCDS CCDS1688

Motif information
ORF

length(323),orf(1:972)
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILA
DLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLE
KALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPA
IQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTL
SNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLM
FCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLN
ALRFTTKHLNDESTSKQIRAMLQ*
a.a.
length
InterPro Name
length(322), motif(2:323) 322 IPR009828 Protein of unknown function DUF1394 [Family]
length(304), motif(16:319) 304 IPR009828 Protein of unknown function DUF1394 [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000268352
H-Inv cluster ID Locus viewHIX0001843
Accession number CR533504.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Protein FAM49A.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_110424)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol FAM49A
HGNC aliases NA
HGNC name family with sequence similarity 49, member A
DDBJ DKFZP566A1524
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000058708
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:81553
KEGG GENES KEGG GENES(81553)
GeneCard GeneCardFAM49A*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  cytoskeleton;  nuclear;  peroxisome; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB240902; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 208092_s_at; 
HG-U133A 208092_s_at; 
HG-U133A_2 208092_s_at; 
HG-U133B NA
HG-U133_Plus_2 208092_s_at; 
HG-U95 35143_at; 
HG-U95A 35143_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2541718;  2541720;  2541723;  2541724;  2541726;  2541728;  2541729;  2541730;  2541732;  2541736; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P21560; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P21560; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
279 .. 279 C/T rs199574540 - CDS Synonymous[Tyr93Tyr]
288 .. 288 C/T rs149244503 - CDS Synonymous[Ser96Ser]
324 .. 324 A/C rs150652954 - CDS Nonsynonymous[Glu108Asp]
371 .. 371 A/G rs71447258 - CDS Nonsynonymous[Glu124Gly]
419 .. 419 G/A rs146120289 - CDS Nonsynonymous[Arg140Gln]
472 .. 472 T/C rs1139966 + CDS Nonsynonymous[Tyr158His]
494 .. 494 A/T rs138219641 - CDS Nonsynonymous[Asn165Ile]
496 .. 496 C/T rs140297141 - CDS Nonsynonymous[Arg166Cys]
675 .. 675 A/G rs143731081 - CDS Synonymous[Thr225Thr]
837 .. 837 T/C rs202029542 - CDS Synonymous[Asp279Asp]
927 .. 927 G/A rs146795138 - CDS Synonymous[Leu309Leu]
975 .. 975 C/T rs201324134 - 3'UTR
983 .. 983 A/T rs187539517 - 3'UTR
1023 .. 1023 G/A rs13404748 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer