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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000252990 Accession number: AY358946 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Protocadherin gamma-A12 isoform 2 precursor.

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Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 290 .. 290 T/C rs11575965 + 5'UTR 651 .. 651 A/G rs79193223 + CDS Nonsynonymous[Glu94Gly] 817 .. 817 G/A rs17097300 + CDS Synonymous[Glu149Glu] 932 .. 932 G/T rs112186927 + CDS Nonsynonymous[Gly188Cys] 1223 .. 1223 G/T rs79883194 + CDS Nonsynonymous[Asp285Tyr] 1379 .. 1379 G/A rs112978142 + CDS Nonsynonymous[Val337Ile] 1782 .. 1782 T/C rs114326665 + CDS Nonsynonymous[Leu471Pro] 2046 .. 2046 C/A rs78612001 + CDS Nonsynonymous[Ala559Glu] 2332 .. 2332 C/T rs13360857 + CDS Synonymous[Leu654Leu] 2455 .. 2455 A/G rs113107293 + CDS Synonymous[Val695Val] 2483 .. 2483 C/A rs73280906 + CDS Nonsynonymous[Leu705Met] 2641 .. 2641 T/C rs116611363 + CDS Synonymous[Val757Val] 2644 .. 2644 C/T rs115990854 + CDS Synonymous[Ser758Ser] 2927 .. 2927 C/T rs76825883 + CDS Nonsynonymous[Arg853Trp] 2939 ^ 2940 -/G rs34260612 + CDS 2973 ^ 2974 -/CTAT rs72463976 + CDS 2999 .. 3002 ATCT/- rs71692039 + CDS 3009 .. 3016 CTATCTAT/- rs71668367 + CDS 3013 ^ 3014 -/CTAT rs72479403 + CDS 3020 ^ 3021 -/CTAT rs3074541 + CDS 3021 .. 3021 T/C rs79220404 + CDS Nonsynonymous[Leu884Ser] 3022 .. 3022 A/T rs78298614 + CDS Nonsynonymous[Leu884Phe] 3312 .. 3312 C/A rs79404417 + 3'UTR  Microsatellite (Short Tandem Repeat, STR) Location Variation Strand 2969..3020 (ctat)13 +  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  Type Start End Strand FRAM 2811 2958 - AluSp 3044 3313 + Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;