H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000247783 Accession number: AJ420495 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Tyrosyl-DNA phosphodiesterase 2; Tyr-DNA phosphodiesterase 2; hTDP2; EC=3.1.4.-; 5'-tyrosyl-DNA phosphodiesterase; 5'-Tyr-DNA phosphodiesterase; ETS1-associated protein 2; ETS1-associated protein II; EAPII; TRAF and TNF receptor-associated protein; Tyrosyl-RNA phosphodiesterase; VPg unlinkase;
 
 

Transcript original information
Accession number AJ420495.1
CAGE tag ID NA
EST ID NA
Clone Number EUROIMAGE 1761756
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 2151[bp] (No. of exon:6)[A:685 T:611 G:476 C:379]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence GGCACGAG(G) [1- 8]
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0005625
Genomic location  G-integra Help Chromosome 6
Location 6p22.3
Position 24650207- 24666814
Strand -
Possible duplicated location(s) NA
Gene structure 6 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:51567
KEGG GENES KEGG GENES(51567)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000036212
Predicted CDS 401..1315;  304[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.696

Motif information
ORF

length(304),orf(401:1315)
MATWKSPCFLYCLFILGPRLTGQNNSVDLTNEETTDSTTSKISPSEDTQQ
ENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYY
SYLKKRSSNYEIITGHEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNL
LCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVI
FAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGIT
AACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL
DIIL*
a.a.
length
InterPro Name
length(256), motif(46:301) 256 IPR005135 Endonuclease/exonuclease/phosphatase [Domain]
length(247), motif(55:301) 247 IPR005135 Endonuclease/exonuclease/phosphatase [Domain]
length(235), motif(59:293) 235 IPR005135 Endonuclease/exonuclease/phosphatase [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000247783
H-Inv cluster ID Locus viewHIX0005625
Accession number AJ420495.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Tyrosyl-DNA phosphodiesterase 2; Tyr-DNA phosphodiesterase 2; hTDP2; EC=3.1.4.-; 5'-tyrosyl-DNA phosphodiesterase; 5'-Tyr-DNA phosphodiesterase; ETS1-associated protein 2; ETS1-associated protein II; EAPII; TRAF and TNF receptor-associated protein; Tyrosyl-RNA phosphodiesterase; VPg unlinkase;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O95551)  [Identity/coverage = 100.0%/76.8%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 107647461093194612743594145744041470203915489334180399681979449721030584212694602192194021980489224053472282206222908287ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt TDP2
EC number EC 3.1.4.-Phosphoric Diester Hydrolases; 
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000036212
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:51567
KEGG GENES KEGG GENES(51567)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  mitochondria;  Other; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
56 301 1zwxA1 4e-17 16.8 244/288 d.151.1.3
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA041601; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 202266_at; 
HG-U133A 202266_at; 
HG-U133A_2 202266_at; 
HG-U133B NA
HG-U133_Plus_2 202266_at; 
HG-U95 34825_at; 
HG-U95A 34825_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2945647;  2945648;  2945649;  2945650;  2945651;  2945653;  2945654;  2945655;  2945665;  2945666;  2945667; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P8311; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P8311; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
14 .. 14 G/C rs201933219 - 5'UTR
57 .. 57 G/A rs143844222 - 5'UTR
82 .. 82 G/A rs185298008 - 5'UTR
85 .. 85 G/A rs2073013 + 5'UTR
91 .. 91 G/A rs200448649 - 5'UTR
98 .. 98 T/A rs149428824 - 5'UTR
321 .. 321 A/G rs114696086 - 5'UTR
361 .. 361 T/A rs137917584 - 5'UTR
387 .. 387 C/T rs62400775 - 5'UTR
393 .. 393 A/G rs146918851 - 5'UTR
471 .. 471 A/G rs17249855 + CDS Nonsynonymous[Asn24Ser]
492 .. 492 A/G rs61757564 - CDS Nonsynonymous[Asn31Ser]
577 .. 577 T/A rs182758509 - CDS Synonymous[Ile59Ile]
586 .. 586 T/C rs11559069 + CDS Synonymous[Asn62Asn]
657 .. 657 G/A rs200729372 - CDS Nonsynonymous[Ser86Asn]
676 .. 676 A/C rs3212230 + CDS Synonymous[Leu92Leu]
678 .. 678 A/T rs144064433 - CDS Nonsynonymous[Gln93Leu]
722 .. 722 A/G rs35977478 - CDS Nonsynonymous[Ser108Gly]
727 .. 727 T/C rs139153310 - CDS Synonymous[Asn109Asn]
868 .. 868 T/C rs1129644 + CDS Synonymous[Asn156Asn]
874 .. 874 A/C rs149606674 - CDS Synonymous[Ser158Ser]
937 .. 937 A/C rs199499565 - CDS Synonymous[Arg179Arg]
961 .. 961 A/G rs11559067 + CDS Synonymous[Leu187Leu]
971 .. 971 C/G rs2294689 + CDS Nonsynonymous[Gln191Glu]
985 .. 985 G/A rs199941419 - CDS Synonymous[Glu195Glu]
1029 .. 1029 G/A rs17249952 + CDS Nonsynonymous[Arg210Gln]
1059 .. 1059 A/G rs139085454 - CDS Nonsynonymous[Asn220Ser]
1145 .. 1145 A/G rs77273535 - CDS Nonsynonymous[Ile249Val]
1149 .. 1149 C/G rs200729725 - CDS Nonsynonymous[Thr250Ser]
1175 .. 1175 C/A rs142438588 - CDS Synonymous[Arg259Arg]
1235 .. 1235 C/G rs148051522 - CDS Nonsynonymous[Leu279Val]
1259 .. 1259 G/A rs202040495 - CDS Nonsynonymous[Gly287Ser]
1260 .. 1260 G/A rs199528335 - CDS Nonsynonymous[Gly287Asp]
1270 .. 1270 T/G rs143596142 - CDS Synonymous[Pro290Pro]
1274 .. 1274 G/A rs199602263 - CDS Nonsynonymous[Asp292Asn]
1299 .. 1299 T/C rs143559471 - CDS Nonsynonymous[Leu300Ser]
1347 .. 1347 T/G rs17249973 + 3'UTR
1387 .. 1387 G/T rs77370926 - 3'UTR
1407 .. 1407 C/A rs11754730 - 3'UTR
1522 .. 1522 A/G rs148937075 - 3'UTR
1561 .. 1561 C/T rs145708673 - 3'UTR
1570 .. 1570 T/C rs3087943 - 3'UTR
1600 .. 1600 C/A rs1047782 + 3'UTR
1613 .. 1613 G/A rs146645304 - 3'UTR
1615 .. 1615 T/C rs17249980 + 3'UTR
1660 .. 1660 A/G rs707887 + 3'UTR
1705 .. 1705 G/A rs16889567 - 3'UTR
2074 .. 2074 A/- rs66564743 - 3'UTR
2094 .. 2094 A/G rs12393 - 3'UTR
2102 .. 2102 T/G rs142381612 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer