H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
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InterPro name*
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OMIM title*
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Pathway name*
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RefSeq (protein) ID
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H-Invitational ID:
HIT000194211
Accession number:
M13231
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
T-cell receptor gamma-2 chain C region; T-cell receptor gamma chain C region PT-gamma-1/2;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
M13231.1
CAGE tag ID
NA
EST ID
NA
Clone Number
NA
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1421[bp] (No. of exon:7)[A:419 T:385 G:292 C:325]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GGCATGCGGTGGGCCCTACTGGTGCTTCTAGCTTTCCTGTCTCCTGCCAG TCAGAAATCTTCCAACTTGGAAGGGAGAACGAAGTCAGTCACCAGGCAGA CTGGGTCATCTGCTGAAATCACTTGCGATCTTACTGTAACAAATACCTTC TACATCCACTGGTACCTACACCAGGAGGGGAAGGCCCCACAGCGTCTTCT GTACTATGACGTCTCCACTGCAAGGGATGTGTTGGAATCAGGACTCAGTC CAGGAAAGTATTATACTCATACACCCAGGAGGTGGAGCTGGATATTGAGA CTGCAAAATCTAATTGAAAATGATTCTGGGGTCTATTACTGTGCCACCTG GGACAGGCAAAAATTATTATAAGAAACTCTTTGGCAGTGGAACAACACTT GTTGTCACAGATAAACAACTTGATGCAGATGTTTCCCCCAAGCCCACTAT TTTTCTTCCTTCAATTGCTGAAACAAAACTCCAGAAGGCTGGAACATACC TTTGTCTTCTTGAGAAATTTTTCCCAGATATTATTAAGATACATTGGCAA GAAAAGAAGAGCAACACGATTCTGGGATCCCAGGAGGGGAACACCATGAA GACTAACGACACATACATGAAATTTAGCTGGTTAACGGTGCCAGAAGAGT CACTGGACAAAGAACACAGATGTATCGTCAGACATGAGAATAATAAAAAC GGAATTGATCAAGAAATTATCTTTCCTCCAATAAAGACAGATGTCACCAC AGTGGATCCCAAAGACAGTTATTCAAAAGATGCAAATGATGTCATCACAA TGGATCCCAAAGACAATTGGTCAAAAGATGCAAATGATACACTACTGCTG CAGCTCACAAACACCTCTGCATATTACATGTACCTCCTCCTGCTCCTCAA GAGTGTGGTCTATTTTGCCATCATCACCTGCTGTCTGCTTGGAAGAACGG CTTTCTGCTGCAATGGAGAGAAATCATAACAGACGGTGGCACAAGGAGGC CATCTTTTCCTCATCGGTTATTGTCCCTAGAAGCGTCTTCTGAGGATCTA GTTGGGCTTTCTTTCTGGGTTTGGGCCATTTCAGTTCTCATGTGTGTACT ATTCTATCATTATTGTATAATGGTTTTCAAACCAGTGGGCACACAGAGAA CCTCAGTCTGTAATAACAATGAGGAATAGCCATGGCGATCTCCAGCACCA ATCTCTCCATGTTTTCCACAGCTCCTCCAGCCAACCCAAATAGCGCCTGC TATAGTGTAGACAGCCTGCGGCTTCTAGCCTTGTCCCTCTCTTAGTGTTC TTTAATCAGATAACTGCCTGGAAGCCTTTCATTTTACACGCCCTGAAGCA GTCTTCTTTGCTAGTTGAATTATGTGGTGTGTTTTTCCGTAATAAGCAAA ATAAATTTAAAAAAATGAAAA
Gene structure information
H-Inv cluster ID
HIX0006611
Genomic location
Chromosome
7
Location
7p14.1
Position
38279183- 38398583
Strand
-
Possible duplicated location(s)
NA
Gene structure
7 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:6967
;
KEGG GENES
KEGG GENES(6967)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000064660
Predicted CDS
320..979; 219[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.757
MILGSITVPPGTGKNYYKKLFGSGTTLVVTDKQLDADVSPKPTIFLPSIA ETKLQKAGTYLCLLEKFFPDIIKIHWQEKKSNTILGSQEGNTMKTNDTYM KFSWLTVPEESLDKEHRCIVRHENNKNGIDQEIIFPPIKTDVTTVDPKDS YSKDANDVITMDPKDNWSKDANDTLLLQLTNTSAYYMYLLLLLKSVVYFA IITCCLLGRTAFCCNGEKS*
Motif information
a.a.
length
InterPro
Name
108
IPR013783
Immunoglobulin-like fold [Domain]
95
IPR007110
Immunoglobulin-like domain [Domain]
74
IPR003597
Immunoglobulin C1-set [Domain]
72
IPR003597
Immunoglobulin C1-set [Domain]
Gene function information
H-Inv ID
HIT000194211
H-Inv cluster ID
HIX0006611
Accession number
M13231.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Coding potential
Protein coding;
Definition
T-cell receptor gamma-2 chain C region; T-cell receptor gamma chain C region PT-gamma-1/2;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
P03986
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
2879283
;
3458221
;
11459064
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
TRGC2
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000064660
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:6967
;
KEGG GENES
KEGG GENES(6967)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
protein binding (
GO:0005515
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
cytosol; peroxisome;
Target P
Other
SOSUI
membrane protein
TMHMM
membrane protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
32
138
1hxmB2
8e-07
96.3
107/107
b.1.1.2
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
209813_x_at; 211144_x_at; 215806_x_at; 216920_s_at; 217374_x_at;
HG-U133A
209813_x_at; 211144_x_at; 215806_x_at; 216920_s_at; 217374_x_at;
HG-U133A_2
209813_x_at; 211144_x_at; 215806_x_at; 216920_s_at; 217374_x_at;
HG-U133B
NA
HG-U133_Plus_2
209813_x_at; 211144_x_at; 215806_x_at; 216920_s_at; 217374_x_at;
HG-U95
41468_at; 72420_at;
HG-U95A
41468_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
72420_at;
HG-U95Av2
NA
HuEx-1_0
2997992; 3046521; 3046522; 3046524; 3046529; 3046530; 3046531; 3046559; 3046560; 3046562; 3046563; 3046564; 3046565; 3046690; 3046712; 3046713;
HuGeneFL
M30894_at;
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P59543;
Whole Human Genome Oligo Microarray:PGID247
A_23_P59543;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Evolutionary information
Last modified:27-May-2015
Relationship
Species
Accession number
MGI
Links
Orthology
Bos sp.
(Cow)
BC149590
G-integra
Orthology
Bos sp.
(Cow)
BC149699
G-integra
Orthology
Monodelphis sp.
(Opossum)
DQ499632
G-integra
Orthology
Bos sp.
(Cow)
ENSBTAT00000036195
G-integra
Orthology
Gallus sp.
(Chicken)
ENSGALT00000020055
G-integra
Orthology
Pongo sp.
(Orangutan)
ENSPPYT00000020534
G-integra
Orthology
Pan sp.
(Chimpanzee)
ENSPTRT00000035284
G-integra
Orthology
Rattus sp.
(Rat)
ENSRNOT00000046953
G-integra
Orthology
Mus sp.
(Mouse)
X04699
G-integra
Orthology
Macaca sp.
(Macaque)
XM_001100492
G-integra
Orthology
Mus sp.
(Mouse)
XM_001474746
G-integra
Orthology
Canis sp.
(Dog)
XM_846584
G-integra
Phylogenetic tree [View by
ATV]
Neighbor-joining (phb)
Related H-InvDB links
Evola
;
d
N
/
d
S
(under constraction);
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
19 .. 19
C/G
rs2020451
+
5'UTR
20 .. 20
T/C
rs1810377
+
5'UTR
76 .. 76
A/G
rs192776147
-
5'UTR
77 .. 77
G/A
rs144180986
-
5'UTR
80 .. 80
C/A
rs201329302
-
5'UTR
93 .. 93
C/G
rs2392560
-
5'UTR
98 .. 98
A/C
rs139625253
-
5'UTR
103 .. 103
G/A
rs3999873
-
5'UTR
105 .. 105
G/C
rs144731993
-
5'UTR
126 .. 126
C/T
rs2392559
-
5'UTR
129 .. 129
T/C
rs2893556
-
5'UTR
140 .. 140
C/T
rs2392558
-
5'UTR
145 .. 145
A/G
rs3999872
-
5'UTR
201 .. 201
G/C
rs149521319
-
5'UTR
218 .. 218
C/A
rs2392557
-
5'UTR
219 .. 219
T/C
rs72496142
-
5'UTR
220 .. 220
G/T/A
rs3999871
-
5'UTR
224 .. 224
G/A
rs2392556
-
5'UTR
264 .. 264
T/C
rs139140199
-
5'UTR
278 .. 278
G/A
rs188181843
-
5'UTR
295 .. 295
T/C
rs114432018
-
5'UTR
296 .. 296
T/C
rs200774960
-
5'UTR
299 .. 299
G/T
rs2392555
-
5'UTR
303 .. 303
G/A
rs3999870
-
5'UTR
305 .. 305
A/G
rs2392554
-
5'UTR
324 .. 324
T/C
rs200144179
-
CDS
Nonsynonymous[Ile2Thr]
335 .. 335
A/C
rs150804886
-
CDS
Nonsynonymous[Ile6Leu]
369 .. 369
A/G
rs183060583
-
CDS
Nonsynonymous[Tyr17Cys]
400 .. 400
T/G
rs199756530
-
CDS
Synonymous[Leu27Leu]
463 .. 463
A/G
rs1053756
+
CDS
Synonymous[Ser48Ser]
478 .. 478
A/G
rs1053757
+
CDS
Synonymous[Lys53Lys]
478 .. 478
A/G
rs71546638
-
CDS
Synonymous[Lys53Lys]
499 .. 499
C/T
rs147430032
-
CDS
Synonymous[Tyr60Tyr]
516 .. 516
A/C
rs186898919
-
CDS
Nonsynonymous[Lys66Thr]
526 .. 526
A/T
rs1053758
+
CDS
Synonymous[Pro69Pro]
530 .. 530
A/G
rs1053759
+
CDS
Nonsynonymous[Ile71Val]
607 .. 607
C/T
rs182225167
-
CDS
Synonymous[Asn96Asn]
607 .. 607
C/T
rs77580342
-
CDS
Synonymous[Asn96Asn]
647 .. 647
G/A
rs78920808
-
CDS
Nonsynonymous[Glu110Lys]
700 .. 700
C/T
rs142126157
-
CDS
Synonymous[Asn127Asn]
704 .. 704
A/G
rs1053761
+
CDS
Nonsynonymous[Ile129Val]
705 .. 705
T/C
rs189460568
-
CDS
Nonsynonymous[Ile129Thr]
764 .. 764
G/T
rs4434531
-
CDS
Nonsynonymous[Asp149Tyr]
768 .. 768
G/A
rs4629747
-
CDS
Nonsynonymous[Ser150Asn]
778 .. 778
A/G
rs2008893
+
CDS
Synonymous[Lys153Lys]
812 .. 812
G/T
rs207467790
-
CDS
Nonsynonymous[Asp165Tyr]
819 .. 819
G/A
rs199771012
-
CDS
AA-STOP[Trp167*]
820 .. 820
G/T
rs1132993
+
CDS
Nonsynonymous[Trp167Cys]
834 .. 834
A/T
rs2736942
+
CDS
Nonsynonymous[Asn172Ile]
861 ^ 862
-/A
rs35804577
-
CDS
867 .. 867
C/T
rs187511270
-
CDS
Nonsynonymous[Ser183Phe]
879 .. 879
T/C
rs1053763
+
CDS
Nonsynonymous[Met187Thr]
879 .. 879
T/C
rs118026939
-
CDS
Nonsynonymous[Met187Thr]
941 .. 941
G/A
rs1053771
+
CDS
Nonsynonymous[Gly208Arg]
941 .. 941
G/A
rs145153957
-
CDS
Nonsynonymous[Gly208Arg]
1089 .. 1089
C/T
rs1053793
+
3'UTR
1089 .. 1089
C/T
rs202021208
-
3'UTR
1121 .. 1121
T/C
rs1053794
+
3'UTR
1156 .. 1156
G/C
rs151249047
-
3'UTR
1156 .. 1156
G/C
rs59016520
-
3'UTR
1183 .. 1183
T/C
rs1053806
+
3'UTR
1264 .. 1264
G/T
rs1053821
+
3'UTR
1264 .. 1264
G/T
rs71248653
-
3'UTR
1269 .. 1269
C/T
rs182739922
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;