H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000193903_05 Accession number: L46876 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Non-protein-coding transcript, uncharacterized transcript.
 
 

Transcript original information
Accession number L46876.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 82[bp] (No. of exon:1)[A:17 T:19 G:25 C:21]
Devision NA
Molecular type NA
Library origin Cell type B-lymphocyte (B-lymphoblastoid cell)
Tissue type blood
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature NA
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0027959
Genomic location  G-integra Help Chromosome 6
Location 6p21.32
Position 32605236- 32605317
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NM_002122
Ensembl ENST00000343139ENST00000374949ENST00000395363ENST00000395364ENST00000422863ENST00000460633ENST00000482745ENST00000486548ENST00000495840ENST00000496318
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000193903_05
H-Inv cluster ID Locus viewHIX0027959
Accession number L46876.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Non-protein-coding; 
Definition Non-protein-coding transcript, uncharacterized transcript.
Classification of non-protein-coding transcripts Classification: Uncharacterized transcript
Type: NA
NA
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID NA
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_002122
Ensembl ENST00000343139ENST00000374949ENST00000395363ENST00000395364ENST00000422863ENST00000460633ENST00000482745ENST00000486548ENST00000495840ENST00000496318
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name: {Celiac disease, susceptibility to} (212750); 
Related information in OMIM OMIM ID:  146880;  Title: MAJOR HISTOCOMPATIBILITY COMPLEX, CLASS II, DQ ALPHA-1
Co-localized orphan diseases OMIM ID:  122550143400604519608545610294611724612558
Disease related mutation MutationView:  146880
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name NA
Disease NA
Substance NA
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
22 .. 22 C/A rs1047989 +
22 .. 22 C/A rs78329561 +
22 .. 22 C/A rs74705834 +
22 .. 22 C/A rs75555135 +
31 .. 31 G/A rs1047992 +
36 .. 36 C/T rs1047993 +
39 .. 39 T/A/C/G rs1130034 +
39 .. 39 T/C rs80318326 +
39 .. 39 T/C rs78211461 +
45 .. 45 C/T rs1129732 +
46 .. 46 A/G rs1129734 +
48 .. 48 C/T rs41551712 +
49 .. 49 A/G rs12722039 +
53 .. 53 T/C rs12722040 +
60 .. 60 T/C rs9272433 +
60 .. 60 T/C rs1129735 +
60 .. 60 T/C rs76100559 +
70 .. 70 G/A rs41545012 +
74 .. 74 G/A rs12722042 +
74 .. 74 G/A rs76453354 +
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer