H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000193587 Accession number: L39957 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Similar to Ig kappa chain V-I region HK102; Precursor; Fragment;
 
 

Transcript original information
Accession number L39957.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 324[bp] (No. of exon:2)[A:85 T:75 G:79 C:85]
Devision HUM
Molecular type mRNA
Library origin Cell type B-cell hybridoma 2F7
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N/C-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0021121
Genomic location  G-integra Help Chromosome 2
Location 2p11.2
Position 89161036- 89247103
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl ENST00000390237ENST00000390238ENST00000390239ENST00000390240ENST00000390241ENST00000390242ENST00000390252ENST00000390256ENST00000390264ENST00000390265ENST00000418209ENST00000429992ENST00000430694ENST00000434790ENST00000442736ENST00000448155ENST00000452230ENST00000453184ENST00000464162ENST00000465170ENST00000468494ENST00000473726ENST00000479981ENST00000480492ENST00000482769ENST00000483158ENST00000484817ENST00000490686ENST00000492167ENST00000493819ENST00000495489ENST00000496168ENST00000498435ENST00000498574ENST00000509129ENST00000518305ENST00000521304ENST00000521705ENST00000523070
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000004575
Predicted CDS 1..324;  108[aa];  Orientation:+1; 
Codon Adaptation Index (CAI).

Motif information
ORF

length(108),orf(1:324)
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYK
ASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYPYTFGQ
GTKLEIKR
a.a.
length
InterPro Name
length(104), motif(2:105) 104 IPR013106 Immunoglobulin V-set [Domain]
length(88), motif(2:89) 88 IPR007110 Immunoglobulin-like [Domain]
length(105), motif(3:107) 105 IPR013783 Immunoglobulin-like fold [Domain]
length(100), motif(8:107) 100 IPR003599 Immunoglobulin subtype [Domain]
length(73), motif(18:90) 73 IPR003596 Immunoglobulin V-set, subgroup [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000193587
H-Inv cluster ID Locus viewHIX0021121
Accession number L39957.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Ig kappa chain V-I region HK102; Precursor; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P01602)  [Identity/coverage = 98.936%/80.34%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 6779204ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt IGKV1-5
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000004575
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl ENST00000390237ENST00000390238ENST00000390239ENST00000390240ENST00000390241ENST00000390242ENST00000390252ENST00000390256ENST00000390264ENST00000390265ENST00000418209ENST00000429992ENST00000430694ENST00000434790ENST00000442736ENST00000448155ENST00000452230ENST00000453184ENST00000464162ENST00000465170ENST00000468494ENST00000473726ENST00000479981ENST00000480492ENST00000482769ENST00000483158ENST00000484817ENST00000490686ENST00000492167ENST00000493819ENST00000495489ENST00000496168ENST00000498435ENST00000498574ENST00000509129ENST00000518305ENST00000521304ENST00000521705ENST00000523070
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT cytosol;  nuclear;  extracellular; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2493082;  2493098;  2493342;  2563824;  2563825;  2563888; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  600666607329609402
Disease related mutation
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name NA
Disease NA
Substance NA
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
32 .. 32 T/C rs11546108 + CDS Nonsynonymous[Leu11Pro]
83 .. 83 G/A rs11546104 + CDS Nonsynonymous[Ser28Asn]
123 .. 123 G/A rs11546106 + CDS Synonymous[Gly41Gly]
135 .. 135 G/A rs11546099 + CDS Synonymous[Lys45Lys]
141 .. 141 G/C rs11546112 + CDS Synonymous[Leu47Leu]
153 .. 153 G/A rs10865492 + CDS Synonymous[Ala51Ala]
158 .. 158 G/C rs11546098 + CDS Nonsynonymous[Ser53Thr]
165 .. 165 A/G rs11546111 + CDS Synonymous[Glu55Glu]
168 .. 168 T/G rs11546118 + CDS Nonsynonymous[Ser56Arg]
179 .. 179 C/T rs11546116 + CDS Nonsynonymous[Ser60Leu]
195 .. 195 T/C rs11546107 + CDS Synonymous[Ser65Ser]
210 .. 210 A/T rs11546102 + CDS Nonsynonymous[Glu70Asp]
223 .. 223 A/G rs11546115 + CDS Nonsynonymous[Ile75Val]
230 .. 230 G/A rs11546105 + CDS Nonsynonymous[Ser77Asn]
258 .. 258 T/C rs11546103 + CDS Synonymous[Tyr86Tyr]
270 .. 270 G/A rs111612902 - CDS Synonymous[Gln90Gln]
290 .. 290 C/G rs113458930 - CDS Nonsynonymous[Thr97Ser]
315 .. 315 G/T rs75187701 - CDS Nonsynonymous[Glu105Asp]
319 .. 319 A/G rs76129343 - CDS Nonsynonymous[Lys107Glu]
320 .. 320 A/G rs114326972 - CDS Nonsynonymous[Lys107Arg]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer