H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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H-Invitational ID: HIT000193346 Accession number: L37727 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Ig kappa chain V-III region VG; Precursor; Fragment;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number L37727.1 CAGE tag ID NA EST ID NA Clone Number NA Experimental resources   NBRC ; HGPD ; Sequence data provider NA Annotation project NA Length of cDNA 268[bp] (No. of exon:1)[A:58 T:60 G:68 C:82] Devision HUM Molecular type mRNA Library origin Cell type PMN Tissue type peripheral blood Develpmental stage adult
Sequence quality information CDS feature N/C-truncated Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA	GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGA AAGAGCCACCCTCTCCTGCAGGGCCAGTCAGGGTGTTAGCAGCTACTTAG CCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGAT GCATCCAGCAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGCC TGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTG CAGTTTATTACTGTCAGC

Gene structure information

H-Inv cluster ID		HIX0029912
Genomic location	Chromosome	2
	Location	2p11.2
	Position	90211969- 90212236
	Strand	+
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NA
	Ensembl	ENST00000390277;  ENST00000417279;
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000006726 Predicted CDS 1..268;  89[aa];  Orientation:+1;  Codon Adaptation Index (CAI). 0.748

EIVLTQSPATLSLSPGERATLSCRASQGVSSYLAWYQQKPGQAPRLLIYD ASSRATGIPARFSGSGPGTDFTLTISSLEPEDFAVYYCQ

Motif information

	a.a. length	InterPro	Name
	89	IPR007110	Immunoglobulin-like [Domain]
	88	IPR013106	Immunoglobulin V-set [Domain]
	87	IPR013783	Immunoglobulin-like fold [Domain]
	72	IPR003596	Immunoglobulin V-set, subgroup [Domain]

Gene function information

H-Inv ID		HIT000193346
H-Inv cluster ID		HIX0029912
Accession number		L37727.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Similar to Ig kappa chain V-III region VG; Precursor; Fragment;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P04433)  [Identity/coverage = 96.629%/77.39%] to Homo sapiens (Human). protein.
Experimental evidence		Protein evidence
PubMed ID		6440122;  ALL;
Gene family/group	H-Inv gene family/group ID	HIF0000001
	Gene family/group name	Immunoglobulin (Ig).
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000006726
	No. of interaction	13
	Interaction partner(s)	HIP000022971;  HIP000022971;  HIP000031941;  HIP000046173;  HIP000048987;  HIP000054822;  HIP000081656;  HIP000081656;  HIP000087218;  HIP000087218;  HIP000106180;  HIP000112326;  HIP000112326;
	BIND	NA
	DIP	133467E;  133522E;  133549E;  133588E;  133602E;  133624E;  133652E;  133676E;  133710E;
	MINT	NA
	HPRD	01273;  04696;  12735;  14377;  15189;  15932;
	IntAct	EBI-2130316;  EBI-2130004;  EBI-2129493;  EBI-2129349;  EBI-2129202;  EBI-2129721;  EBI-2130585;  EBI-2129809;  EBI-2130525;
Database links	RefSeq	NA
	Ensembl	ENST00000390277;  ENST00000417279;
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	extracellular;  cytosol;  nuclear;  Other;
Target P	Other
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:NA Title:NA
Co-localized orphan diseases		OMIM ID:  600666;  607329;  609402;
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	NA
	Disease	NA
	Substance	NA
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 1 .. 1 G/T rs61755905 - CDS AA-STOP[Glu1*] 6 .. 6 T/A rs61755910 - CDS Synonymous[Ile2Ile] 37 .. 37 T/G rs61748331 - CDS Nonsynonymous[Leu13Val] 82 .. 82 G/A rs58164053 + CDS Nonsynonymous[Gly28Ser] 82 .. 82 G/A rs3929270 + CDS Nonsynonymous[Gly28Ser] 111 .. 111 G/A rs2847799 + CDS Synonymous[Gln37Gln] 149 .. 149 A/G rs7578119 + CDS Nonsynonymous[Asp50Gly] 149 .. 149 A/G rs61739964 - CDS Nonsynonymous[Asp50Gly] 199 .. 199 C/T rs2624347 + CDS Nonsynonymous[Pro67Ser] 231 .. 231 C/A rs11546075 + CDS Nonsynonymous[Ser77Arg] 253 .. 253 G/A rs11546082 + CDS Nonsynonymous[Val85Ile] 258 .. 258 T/C rs11546088 + CDS Synonymous[Tyr86Tyr]  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;