H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000191926 Accession number: L08900 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Similar to Myosin-reactive immunoglobulin light chain variable region; Fragment;
 
 

Transcript original information
Accession number L08900.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 320[bp] (No. of exon:2)[A:82 T:74 G:73 C:91]
Devision HUM
Molecular type mRNA
Library origin Cell type B-cell
Tissue type bone marrow
Develpmental stage adult
Mini-G
Sequence quality information
CDS feature N/C-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0021121
Genomic location  G-integra Help Chromosome 2
Location 2p11.2
Position 89160397- 89513185
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl ENST00000390237;  ENST00000390238;  ENST00000390239;  ENST00000390240;  ENST00000390241;  ENST00000390242;  ENST00000390252;  ENST00000390256;  ENST00000390264;  ENST00000390265;  ENST00000418209;  ENST00000429992;  ENST00000430694;  ENST00000434790;  ENST00000442736;  ENST00000448155;  ENST00000452230;  ENST00000453184;  ENST00000464162;  ENST00000465170;  ENST00000468494;  ENST00000473726;  ENST00000479981;  ENST00000480492;  ENST00000482769;  ENST00000483158;  ENST00000484817;  ENST00000490686;  ENST00000492167;  ENST00000493819;  ENST00000495489;  ENST00000496168;  ENST00000498435;  ENST00000498574;  ENST00000509129;  ENST00000518305;  ENST00000521304;  ENST00000521705;  ENST00000523070; 
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000007470
Predicted CDS 1..320;  106[aa];  Orientation:+1; 
Codon Adaptation Index (CAI).

Motif information
ORF

length(106),orf(1:320) ELTQSPSSLSASIGDRVTITCRASQGINNYLAWYQQRPGKAPNLLIYAAS TLQSGVPPRFSGSGSGTDFTLTISSLQPEDVATYYCQKYNSVPHTFGGGT KVEIKR 		a.a.
length		 InterPro Name
length(105), motif(1:105) 105 IPR007110 Immunoglobulin-like [Domain]
length(104), motif(2:105) 104 IPR013783 Immunoglobulin-like fold [Domain]
length(102), motif(2:103) 102 IPR013106 Immunoglobulin V-set [Domain]
length(100), motif(6:105) 100 IPR003599 Immunoglobulin subtype [Domain]
length(73), motif(16:88) 73 IPR003596 Immunoglobulin V-set, subgroup [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000191926
H-Inv cluster ID Locus viewHIX0021121
Accession number L08900.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Myosin-reactive immunoglobulin light chain variable region; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9UL70)  [Identity/coverage = 87.736%/98.15%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 1660528;  9614934;  ALL; 
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000007470
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl ENST00000390237;  ENST00000390238;  ENST00000390239;  ENST00000390240;  ENST00000390241;  ENST00000390242;  ENST00000390252;  ENST00000390256;  ENST00000390264;  ENST00000390265;  ENST00000418209;  ENST00000429992;  ENST00000430694;  ENST00000434790;  ENST00000442736;  ENST00000448155;  ENST00000452230;  ENST00000453184;  ENST00000464162;  ENST00000465170;  ENST00000468494;  ENST00000473726;  ENST00000479981;  ENST00000480492;  ENST00000482769;  ENST00000483158;  ENST00000484817;  ENST00000490686;  ENST00000492167;  ENST00000493819;  ENST00000495489;  ENST00000496168;  ENST00000498435;  ENST00000498574;  ENST00000509129;  ENST00000518305;  ENST00000521304;  ENST00000521705;  ENST00000523070; 
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT cytosol;  nuclear;  peroxisome;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  600666;  607329;  609402; 
Disease related mutation
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name NA
Disease NA
Substance NA
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
151 .. 151 A/G rs382893 + CDS Nonsynonymous[Thr51Ala]
151 .. 151 A/G rs116483981 - CDS Nonsynonymous[Thr51Ala]
162 ^ 163 -/G rs71230976 + CDS
183 .. 183 T/C rs12619054 - CDS Synonymous[Ser61Ser]
228 .. 228 G/A rs61735918 - CDS Synonymous[Leu76Leu]
279 .. 279 T/G rs111908384 - CDS Synonymous[Pro93Pro]
315 .. 315 A/C rs78964890 - CDS Nonsynonymous[Lys105Asn]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;