H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000099206 Accession number: BC050470 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number BC050470.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:6200207
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1605[bp] (No. of exon:1)[A:474 T:469 G:352 C:310]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Peripheral Nervous System, sympathetic trunk
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1540(+) Signal: 1520-1524(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0214120
Genomic location  G-integra Help Chromosome 1
Location 1q21.3
Position 154134290- 154135827
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7170
KEGG GENES KEGG GENES(7170)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000448546
Predicted CDS 951..1097;  48[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.695

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000099206
H-Inv cluster ID Locus viewHIX0214120
Accession number BC050470.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000448546
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7170
KEGG GENES KEGG GENES(7170)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular; 
Target P signal peptide
SOSUI membrane protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 238079_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 238079_at; 
HG-U133_Plus_2 238079_at; 
HG-U95 55837_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 55837_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2436575; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
221 .. 221 A/C rs186291812 - 5'UTR
241 .. 241 G/A rs150748157 - 5'UTR
278 ^ 279 -/A rs35224008 - 5'UTR
291 .. 291 C/T rs141628385 - 5'UTR
313 .. 313 C/A rs111288073 - 5'UTR
328 .. 328 A/G rs180879229 - 5'UTR
357 .. 357 C/T rs188525371 - 5'UTR
383 .. 383 A/G rs4446955 - 5'UTR
520 .. 520 C/T rs145933424 - 5'UTR
561 .. 561 G/A rs78724071 - 5'UTR
564 .. 564 G/A rs78002555 - 5'UTR
573 .. 573 T/C rs185765815 - 5'UTR
681 .. 681 T/G rs143097126 - 5'UTR
733 .. 733 C/G rs181516869 - 5'UTR
786 .. 786 T/C rs138488178 - 5'UTR
813 .. 813 C/A rs116473927 - 5'UTR
855 .. 855 A/C rs12064494 - 5'UTR
967 .. 967 T/-/TT rs58969761 - CDS
986 ^ 987 -/T/TT rs58289686 - CDS
1052 .. 1052 G/C rs199849200 - CDS Nonsynonymous[Lys34Asn]
1176 .. 1176 A/G rs1134632 + 3'UTR
1201 .. 1201 G/A rs189181748 - 3'UTR
1272 .. 1272 G/T rs3196889 + 3'UTR
1526 .. 1526 A/G rs185496725 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MER3 1 170 +
AluSc 244 435 +
AluSg 967 1264 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer