H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000099206 Accession number: BC050470 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Hypothetical short protein.
 
 

Transcript original information
Accession number BC050470.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:6200207
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (TPM3) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (TPM3);
Sequence data provider NA
Annotation project NA
Length of cDNA 1605[bp] (No. of exon:1)[A:474 T:469 G:352 C:310]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Peripheral Nervous System, sympathetic trunk
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1540(+) Signal: 1520-1524(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001100
Genomic location  G-integra Help Chromosome 1
Location 1q21.3
Position 154134290- 154135827
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NM_152263NM_153649NM_001043351NM_001043352NM_001043353
Ensembl ENST00000271850ENST00000302206ENST00000312970ENST00000323144ENST00000328159ENST00000330188ENST00000341372ENST00000341485ENST00000368527ENST00000368530ENST00000368531ENST00000368533ENST00000368545ENST00000466010ENST00000469717ENST00000473036ENST00000501658ENST00000504663ENST00000505010ENST00000509409ENST00000509601ENST00000513769ENST00000515609ENST00000540332
Entrez Gene Entrez Gene ID:7170
KEGG GENES KEGG GENES(7170)
GeneCard GeneCardTPM3*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000067735
Predicted CDS 211..363;  50[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.738

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000099206
H-Inv cluster ID Locus viewHIX0001100
Accession number BC050470.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID HIF0000329
Gene family/group name Putative Tropomyosin (IPR000533).
Evidence motif (InterPro) ID IPR000533
Gene symbol/name HGNC symbol TPM3
HGNC aliases NA
HGNC name tropomyosin 3
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000067735
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_152263NM_153649NM_001043351NM_001043352NM_001043353
Ensembl ENST00000271850ENST00000302206ENST00000312970ENST00000323144ENST00000328159ENST00000330188ENST00000341372ENST00000341485ENST00000368527ENST00000368530ENST00000368531ENST00000368533ENST00000368545ENST00000466010ENST00000469717ENST00000473036ENST00000501658ENST00000504663ENST00000505010ENST00000509409ENST00000509601ENST00000513769ENST00000515609ENST00000540332
Entrez Gene Entrez Gene ID:7170
KEGG GENES KEGG GENES(7170)
GeneCard GeneCardTPM3*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Putative Tropomyosin (IPR000533). Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT cytosol;  nuclear;  plasma membrane;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 238079_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 238079_at; 
HG-U133_Plus_2 238079_at; 
HG-U95 55837_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 55837_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2436575; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name: Nemaline myopathy 1, autosomal dominant (161800); 
Related information in OMIM OMIM ID:  191030;  Title: TROPOMYOSIN 3
Co-localized orphan diseases OMIM ID:  115665116600155600600975605225605606606788606852606928607317607671608543608553608995610320612367612596
Disease related mutation MutationView:  191030
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(7170)
Disease Entrez Gene ID:(7170)
Substance Entrez Gene ID:(7170)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
278 ^ 279 -/A rs35224008 - CDS
313 .. 313 C/A rs111288073 - CDS Nonsynonymous[Gln35Lys]
383 .. 383 A/G rs4446955 - 3'UTR
561 .. 561 G/A rs78724071 - 3'UTR
564 .. 564 G/A rs78002555 - 3'UTR
813 .. 813 C/A rs116473927 - 3'UTR
855 .. 855 A/C rs12064494 - 3'UTR
966 ^ 967 -/T rs58289686 - 3'UTR
967 .. 967 T/-/TT rs58969761 - 3'UTR
1176 .. 1176 A/G rs1134632 + 3'UTR
1272 .. 1272 G/T rs3196889 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MER3 1 170 +
AluSc 244 435 +
AluSg 967 1264 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer