H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000099152 Accession number: BC050315 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Hypothetical protein.

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number BC050315.1 CAGE tag ID NA EST ID NA Clone Number IMAGE:4822457 Experimental resources   NBRC ; HGPD ; Antibody (ZNF609) ; Catalog (ZNF609); Sequence data provider NA Annotation project NA Length of cDNA 4252[bp] (No. of exon:1)[A:968 T:1185 G:946 C:1153] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type Testis Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA Site: 4237(+) Signal: 4206-4210(+) Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

GCTGTCTCACCTCCACCAGACCTCCGGACTACCTGACCCTACCTCTTCCT CAGGAGCTGGAGAGCTGGTACTTAGCAAAAATATTTATTCTCTCAGCCAC AGTTATGACTATTGTGGCCTCTGTGGAGATGAAGGCACGGGAAGCAACCA GGGGAACATGGCCTCAGCCCAGAGAAGCCACTGCTCTGTTCCCCAAGCCC TTGGTCTGCTGCTGGAGCAGTACCAGCCCCCCCGCCCACCAGGGAGGGAC CCCCACCCCCAAGCACTGGGTAAGGTCTGAAGACAGCACAGCAGCCATAC CCCTCACCATCATTACCACCATCACCAGATTCTGCATCTCCCTAGTGCTT TGCACCCTGGGAATTGGCAGCATGTGGAGGAACTAGAATCTCAGGAAAGA AATTGGGGGTTGTTTTCTACATAATTGTGAAAACAAGGTCTTCAAATGTG GAGACTTCTCCCCATTTACATGAGCACATATAAACGCTCACAACCTAGCC TGGAAAGGAAGACCAAGGCATCTGCCCCAACATGGCCTTGAGCTGCCTGT GAGGCAGGGGGCAGGGGTTCCAACACCAGCACAGGGCTCCCCAGGGACAC TGGGAGCAAGCTGGTGCTGGAGCATGAATGACGTCTGTGAAGTAGAACCT GCGTCCCCACTAAGTCCTGCTGCTTCTTATTCCCCAACTCCTTGCCCTTT TCCCTTCCCTCCTAACCCCTTGGTGCCTTTCCCAGGGGGATCCCCACACT GGTCTTGCCTCTTCTTTTCCACTGCTTGGCTCTTAAGCCTCAGGCAGATA AACTAGTATTCCCCCCAGCTTGGGGAACCTTGGAGTCTGCCAGGTCACCT TAGGGCAAGGCCCAGAAGGCAGCCCCTGGGAGCACCCAGCAGTTCTTGGA GATGTCCTGTCATCTAGCCATCTGATATCTTCCTCATTTGAGGCCACAGA TATATACAGCCCAATTCCTCTGTCTACAAGTACATGATTTTATATAGCTC AGTCTATAACCTCCATGTGGGCCAATATAAGCTGTGTTTCTTGGTAACAC ATATTTTGTTTGAGGGGCCACTGGCCATGGGAGGTTATTTGTTCCTTAGA CCCTGGAATAACACATCCAAGCCATTACTTATTAGAGTCTCAGAATGTAC TCAGTGGAGCTGTGCTTTGAGGCAGCCAACATTTCTCTGCTCTCCTTAGA AATGCAGTCTCCCAATGGAAGCTTTATACTCTTTGTACTGGGAAAGTGAG GATGATTTGGTAGCTTTATTGGGGTCATGTCTTCCCCAAGGTGTGGGGAG CTTAGCTTACTTGGCTTTTGAGGTATCATCCCTCTGTTCTCCCCTCCTAT CTTTCCATGACCCTCTGGATTGAGAGAGAGAGATAAAGACTGACAGACAC CAGTGTAGGCTGGAAAAGGGAGTGTGTGACCAGAGTGCCAAAAGTGACTA GGAGCAGGAACTTGGCTCCGACTCAGTTTGGAAAATGGGAAATAGGGGAC AGTAAGCACAATGCCCAGTAGTAGTTGATTTCCAAGGACCCTGGAACCCT ACACTTGAGAGGCTTAGGGTCACCATCTGCTCAAGAGGATCCCCTCTGAT CTACAGGCCTTTTCCCTAGGTTTCTGCCTCCTCGTTTTTGTTCAAGTTGG GTTCTGAGTCCTCCCCAAAAACCATTGTTTTAGACCTCTTGGCAGGGCCC CAAAACAGCCTCCCTCATACCCATCATTCCGTCTGCCTTCTGCTGCCCTC ATGGGCAGTGCTCTGAGCAGTGACCTCCCTTTCCTCCGTGGAAGTAGCTA GTGCAGACACCGTCATCCCACCCCACCTGAGTCACCCCAACCAAGAGGGT GACTGAATTTCAGCCTGATTATGCCCTCCTGGGGCTCCTGTGAGGTGGAG CCAAGGTTCCCTCTCTGTTCCTGTTTGTTTTTAAATATTGTTGTGTGTTT TGTATCTGTGGCACTGGCCTGCAGCATACTCTGTATATATTGTAAAGAAA CCGTTAGGAGTAATTTTCTTTTGCATTGGGCAGGCATGGCCCTGCATTCC TGCCCTTTCCACTCATTCTGTAACACAGAGGACGAACTTCTGTATTAGCT GGGCAGCCTTGGGTTCTCCAGAAGAGAACAGGTTTTTCTTTTCCTTTTTA ATTTTTCTTCTTAAACATTTGGCTCTTTGATCCTCATATCCAAGTCTCCC CTGAAGAGTAGGAGCTGCTCAGAAGAGCAGGTGAAAGCCACCATGGCAGA TCCTGATGCCTGCCGGGCCTAGTCTTCCCTCTGAAATAACATGAAGCAGC AGCTGTGGAGATTCTTGACAAGGGCTGGGTGAAAGATTTGCTGCCCACCT CTACATGGGGAGGAGAAACACAGGTGGGAGCTACCTGTGGCATCCATGAC CTAGTCAGAGGGATGAGATGCTCAGCAGGGGTCCCCATCCTATCCCACCC CACAAACAAAGGCTGGAAAAATTTGCTACCAAGGGCCAAGACCACCAGAC CAAGCCTGTTTATGAGCCACCCCTGCCCAGGCCCTCACAGACATTGCTCA CGGGGCTTCCCATAGAGGAGAAGCTAAAGAGGGAGGGGGCCTCATCCCCA GATAGATCAGGCAAGGCTTGGAGAGCTGCTCTTTAGGATCCACATCAACT ACTTCCTCATTTTAAGGTATGGCAGTTCCCTTCATCCCCTTTTCCTGCCT TGTACATGTACATGTATGAAATTTCCTTCTCTTACCGAACTCTCTCCACA CATCACAAGGTCAAAGAACCACACGCTTAGAAGGGTAAGAGGGCACCCTA TGAAATGAAATGGTGATTTCTTGAGTCTCTTTTTTCCACGTTTAAGGGGC CATGGCAGGACTTAGAGTTGCGAGTTAAGACTGCAGAGGGCTAGAGAATT ATTTCATACAGGCTTTGAGGCCACCCATGTCACTTATCCCGTATACCCTC TCACCATCCCCTTGTCTACTCTGATGCCCCCAAGATGCAACTGGGCAGCT AGTTGGCCCCATAATTCTGGGCCTTTGTTGTTTGTTTTAATTACTTGGGC ATCCCAGGAAGCTTTCCAGTGATCTCCTACCATGGGCCCCCCTCCTGGGA TCAAGCCCCTCCCAGGCCCTGTCCCCAGCCCCTCCTGCCCCAGCCCACCC GCTTGCCTTGGTGCTCAGCCCTCCCATTGGGAGCAGGTTGGGGCGAGCTG GAGGCCCGGGCTGGAGGGGCAGTGTTGCTGTTCATAGATTTTGTTCCATT GGCGTTGCTCTGTTGAATTTAATTTCAGTCTTCCTGATTCTTCCCTTCTG TAAAGTGTACATTACCAAGTTCCTTGTTTTTTTATATATATATATAAATA TATATATATACAAACTGTACTCTTTTTGCCTTTGTACATTCAGGCAAGAA GAGAAAATAAATCTTTTTAAGAGACAATCACAAATCTGTGAGGGCTGCTG GTTATTTCTCCTGGAGTTTGCTGCTGAGCTGCCTCTTCCTTCCTCCCAAT TTTCCTGTTCTCCCTCAGCTCTCCTGATCTTCCTGGCCCTGCTCCATATG CATCCTCAGCTTCACTTTCCCTGGCTGATGGCAAGCTGTTGAATCCAGTG TCCAGACTACCTGCCTTGTAACCCTTTTCTGCCCAGCATTGTTTTCTGGC TTGGCCACTGGCTTAGCCCAGGAGCTTTACTCTGTGCCCTGGCCTCCCCT CTCTTCACCTTTAGATTTCCATTCACCGAAGTGGCTTTGGACCCCTGGGT ACTCTGGGACCTGTTTCCTGGAGGCCCTGGCTTGGGACACTCACCTGTGA AACTATGCAGCTGGGAGCTCTCTGCCTAAGAGTTTGCACTATTTAAACCT GCCTGGGAGTTAGGACGGATGGTTTTAGGAATGACCGGAAAACTACCCCT AAAACTCCCCCGACATTCCAGCCTCTAGAATGCTCTGATCCAGAGCTCAG TGGATGATTCCCAGCTGGTGGACTCCTGTGGCTACCCCATCAGAACAAGG GCTAAGGGTTTATGGGTCAAGAGTATTTGATCAGAATTTTAAAGGGTGGT ATACTCTGAAACATAGCCCAACCAAACCATTGTTTGGCCGCTTTCTCTTT TCCTCTACCTTCCTCATCCCCACTTTTTTCCCTTTCTCTCTACTTCCTCT TCTTAATTGGCTTTGGAATTGAAATATATTTTTAAATTATTTGTTGTATT TATTGAATAAAGTTTTTAATGTCCCTGTTCTTAAAGAAAAAAAAAAAAAA AA

Gene structure information

H-Inv cluster ID		HIX0012341
Genomic location	Chromosome	15
	Location	15q22.31
	Position	64974033- 64978267
	Strand	+
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NM_015042;
	Ensembl	ENST00000326648;  ENST00000416172;
	Entrez Gene	Entrez Gene ID:23060;
	KEGG GENES	KEGG GENES(23060);
	GeneCard	ZNF609;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000106759 Predicted CDS 105..386;  93[aa];  Orientation:+3;  Codon Adaptation Index (CAI). 0.838

MTIVASVEMKAREATRGTWPQPREATALFPKPLVCCWSSTSPPAHQGGTP TPKHWVRSEDSTAAIPLTIITTITRFCISLVLCTLGIGSMWRN*

Gene function information

H-Inv ID		HIT000099152
H-Inv cluster ID		HIX0012341
Accession number		BC050315.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Hypothetical protein.
Similarity category		Category: Hypothetical protein(Category V).
		Hypothetical protein.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	ZNF609
	HGNC aliases	NA
	HGNC name	zinc finger protein 609
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000106759
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_015042;
	Ensembl	ENST00000326648;  ENST00000416172;
	Entrez Gene	Entrez Gene ID:23060;
	KEGG GENES	KEGG GENES(23060);
	GeneCard	ZNF609;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	plasma membrane;  cytosol;  mitochondria;
Target P	Not predicted
SOSUI	membrane protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	212617_at;  212618_at;
		HG-U133A	212617_at;  212618_at;
		HG-U133A_2	212617_at;  212618_at;
		HG-U133B	NA
		HG-U133_Plus_2	212617_at;  212618_at;
		HG-U95	32071_at;
		HG-U95A	32071_at;
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	3598104;  3598105;  3629203;  3629204;  3629205;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	A_24_P145047;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 111 .. 111 A/G rs8034064 + CDS Nonsynonymous[Ile3Val] 820 .. 820 T/A rs116853168 + 3'UTR 1118 .. 1118 C/A rs76832957 + 3'UTR 1143 ^ 1144 -/C rs34469169 + 3'UTR 1440 ^ 1441 -/A rs72333912 + 3'UTR 1443 ^ 1444 -/A rs34049466 + 3'UTR 1582 .. 1582 C/T rs76580542 + 3'UTR 1731 .. 1731 G/C rs11071804 + 3'UTR 2081 .. 2081 G/A rs74019280 + 3'UTR 2201 .. 2201 C/T rs71396429 + 3'UTR 2394 .. 2394 C/A rs113216323 + 3'UTR 2582 .. 2582 G/A rs112306400 + 3'UTR 2678 .. 2678 C/T rs76375775 + 3'UTR 2911 .. 2911 G/C rs73454996 + 3'UTR 2944 .. 2944 T/C rs76305810 + 3'UTR 3023 .. 3023 C/T rs72742982 + 3'UTR 3084 .. 3084 G/- rs111427628 + 3'UTR 3113 .. 3113 C/T rs4402501 - 3'UTR 3243 .. 3243 G/T rs77115962 + 3'UTR 3349 .. 3349 T/A rs114484072 + 3'UTR 3499 .. 3499 A/G rs116529688 + 3'UTR 3856 .. 3856 G/A rs111677338 + 3'UTR 3893 .. 3893 C/T rs55729175 + 3'UTR 3905 .. 3905 C/T rs56016689 + 3'UTR 4138 .. 4138 C/T rs56251795 + 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;