H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000098026_03 Accession number: BC045533 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Golgi resident protein GCP60.
 
 

Transcript original information
Accession number BC045533.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:57123 IMAGE:5259930
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ACBD3) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ACBD3);
Sequence data provider NA
Annotation project NA
Length of cDNA 3560[bp] (No. of exon:8)[A:1059 T:1020 G:820 C:661]
Devision NA
Molecular type NA
Library origin Cell type NA
Tissue type Brain, hippocampus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 3546(+) Signal: 3527-3531(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) CAGGAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001643
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 226332382- 226374409
Strand -
Possible duplicated location(s) NA
Gene structure 8 exon(s)
Database links RefSeq NM_022735; 
Ensembl ENST00000366812;  ENST00000464927; 
Entrez Gene Entrez Gene ID:64746; 
KEGG GENES KEGG GENES(64746); 
GeneCard GeneCardACBD3;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000024076
Predicted CDS 34..1620;  528[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.743
Database links RefSeq NP_073572; 
UniProt Q9H3P7; 
CCDS CCDS1551; 

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000098026_03
H-Inv cluster ID Locus viewHIX0001643
Accession number BC045533.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Golgi resident protein GCP60.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_073572)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ACBD3
HGNC aliases "golgi complex associated protein 1, 60kDa", "acyl-Coenzyme A binding domain containing 3"
HGNC name acyl-CoA binding domain containing 3
DDBJ ACBD3
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000024076
No. of interaction 25
Interaction partner(s) HIP000021834;  HIP000023033;  HIP000025295;  HIP000028585;  HIP000028785;  HIP000028936;  HIP000029584;  HIP000047440;  HIP000049733;  HIP000054007;  HIP000055792;  HIP000057104;  HIP000060896;  HIP000066454;  HIP000066511;  HIP000072624;  HIP000072624;  HIP000077623;  HIP000088671;  HIP000091231;  HIP000091335;  HIP000091335;  HIP000095713;  HIP000097882;  HIP000103500; 
BIND 150657;  209285;  209286; 
DIP NA
MINT NA
HPRD 00156;  00496;  00695;  00939;  01038;  01852;  02546;  02755;  04043;  04045;  04385;  06490;  09529;  09888;  10156;  11804;  13954;  15213;  16016; 
IntAct EBI-536629; 
Database links RefSeq NM_022735; 
Ensembl ENST00000366812;  ENST00000464927; 
Entrez Gene Entrez Gene ID:64746; 
KEGG GENES KEGG GENES(64746); 
GeneCard GeneCardACBD3;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT nuclear;  cytosol; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  115665;  116600;  155600;  600975;  605225;  605606;  606788;  606852;  606928;  607317;  607671;  608543;  608553;  608995;  610320;  612367;  612596; 
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(64746)
Disease Entrez Gene ID:(64746)
Substance Entrez Gene ID:(64746)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
54 .. 54 A/T rs77797743 - CDS Synonymous[Ala7Ala]
593 ^ 594 -/C rs111701159 - CDS
594 .. 594 A/C rs2306120 - CDS Nonsynonymous[Glu187Asp]
612 .. 612 A/T rs9730340 - CDS Nonsynonymous[Glu193Asp]
673 .. 673 C/G rs112143123 - CDS Nonsynonymous[Arg214Gly]
718 .. 718 A/C rs78919255 - CDS Synonymous[Arg229Arg]
719 .. 719 G/C rs77727776 - CDS Nonsynonymous[Arg229Thr]
1212 .. 1212 C/T rs114674626 - CDS Synonymous[Ser393Ser]
1451 .. 1451 A/G rs17855715 - CDS Nonsynonymous[Lys473Arg]
1503 .. 1503 G/T rs3211100 + CDS Nonsynonymous[Glu490Asp]
1564 .. 1564 T/C rs113333885 - CDS Nonsynonymous[Ser511Pro]
1641 .. 1641 G/A rs41304002 - 3'UTR
1647 .. 1647 A/T rs1062716 + 3'UTR
1846 .. 1846 A/G rs111803808 - 3'UTR
2002 .. 2002 G/A rs61835249 - 3'UTR
2165 .. 2165 C/A rs61835248 - 3'UTR
2381 .. 2385 TTTTG/- rs72264515 - 3'UTR
2562 .. 2562 A/G rs41314288 - 3'UTR
2726 .. 2726 C/T rs41304004 - 3'UTR
2933 .. 2933 G/A rs1043641 + 3'UTR
3222 ^ 3223 -/T rs35794165 - 3'UTR
3231 ^ 3232 -/T rs71746173 - 3'UTR
3295 .. 3296 AT/- rs71728926 - 3'UTR
3455 .. 3455 T/C rs115185049 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;