H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000095824 Accession number: BC039575 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
 
 

Transcript original information
Accession number BC039575.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:5725757
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ACBD3) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ACBD3);
Sequence data provider NA
Annotation project NA
Length of cDNA 1994[bp] (No. of exon:8)[A:627 T:406 G:549 C:412]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type Ovary, pooled from 3 adults
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1930(+) Signal: 1905-1909(+)
Vector/adapter sequence NA
Frame shift 594-594[bp] Insertion(A);
Remaining intron NA
Splice site acceptor (NAGNAG) CAGGAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001643
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 226333994- 226374401
Strand -
Possible duplicated location(s) NA
Gene structure 8 exon(s)
Database links RefSeq NM_022735
Ensembl ENST00000366812ENST00000464927
Entrez Gene Entrez Gene ID:64746
KEGG GENES KEGG GENES(64746)
GeneCard GeneCardACBD3*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000024076
Predicted CDS 26..1612;  528[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.744
Database links RefSeq NP_073572
UniProt Q9H3P7
CCDS CCDS1551

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000095824
H-Inv cluster ID Locus viewHIX0001643
Accession number BC039575.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9H3P7)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 11590181126658011470203915489334167104141869197621269460ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ACBD3
HGNC aliases "golgi complex associated protein 1, 60kDa", "acyl-Coenzyme A binding domain containing 3"
HGNC name acyl-CoA binding domain containing 3
DDBJ NA
UniProt ACBD3
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000024076
No. of interaction 3
Interaction partner(s) HIP000040279HIP000100876HIP000246796
BIND 150193; 
DIP NA
MINT MINT-61799; 
HPRD 03933;  03990;  06901; 
IntAct EBI-1791788; 
Database links RefSeq NM_022735
Ensembl ENST00000366812ENST00000464927
Entrez Gene Entrez Gene ID:64746
KEGG GENES KEGG GENES(64746)
GeneCard GeneCardACBD3*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT nuclear;  cytosol; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:26-Mar-2013
Start End PDB_ID E-value Identity Coverage SCOP_ID
83 172 1hbkA 5e-14 17.4 86/89 a.11.1.1
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA060117; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 202323_s_at; 
HG-U133A 202323_s_at; 
HG-U133A_2 202323_s_at; 
HG-U133B NA
HG-U133_Plus_2 202323_s_at; 
HG-U95 89155_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 89155_at; 
HG-U95Av2 NA
HuEx-1_0 2383111;  2458706;  2458707;  2458710;  2458712;  2458714;  2458715;  2458716;  2458717;  2458718;  2458721;  2458722;  2458723;  2458724; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  115665116600155600600975605225605606606788606852606928607317607671608543608553608995610320612367612596
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(64746)
Disease Entrez Gene ID:(64746)
Substance Entrez Gene ID:(64746)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
46 .. 46 A/T rs77797743 - CDS Synonymous[Ala7Ala]
585 ^ 586 -/C rs111701159 - CDS
586 .. 586 A/C rs2306120 - CDS Nonsynonymous[Glu187Asp]
604 .. 604 A/T rs9730340 - CDS Synonymous[Gly193Gly]
710 .. 710 A/C rs78919255 - CDS Nonsynonymous[Lys229Gln]
1204 .. 1204 C/T rs114674626 - CDS Synonymous[Phe393Phe]
1443 .. 1443 A/G rs17855715 - CDS Nonsynonymous[Gln473Arg]
1556 .. 1556 C/T rs113333885 - CDS Nonsynonymous[Leu511Phe]
1633 .. 1633 G/A rs41304002 - 3'UTR
1639 .. 1639 T/A rs1062716 + 3'UTR
1838 .. 1838 G/A rs111803808 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer