H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
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Definition*
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---
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H-Invitational ID:
HIT000089604
Accession number:
BC018424
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BC018424.1
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE:4508536
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
3519[bp] (No. of exon:1)[A:1103 T:1203 G:510 C:703]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
Testis, embryonal carcinoma
Develpmental stage
NA
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
Site: 3505(+) Signal: 3486-3490(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
CAAATGCTTCTGCATAAGTCCTCTGTTTCTAAATTTCCTACCACATATTA CACATGCAAAACTGCCTTTTTTCTGATGAGCCTGGGCATGCCTTACAATG TGACCACCTAAAAATTCCTTGTTACATAACATACAACGATGCCTTGGGAC ATTGTGATCTACTTTGGAAGTATTGAGAGCTGTAAGATTTTTCTTCGTAT TAATATGACCTTTAGGCTGCACTCCAGATACATCATCAGGATCAGTCTCT CCAGTGCTCTGATCTGTAAGAGAGTCAAACCCTTCATCCAAACCTTGCTG TTCCTCCGTCCTTTTTAGATTACCTGCATTATTTTCCAGTGTGCTTTCAT TTAGAAATCTAACTGCTGATTTATCACTCAATAATGCTACACAGTTTTTC TTAATCATTACGAAGTTCCAAAATTCAGGGTCAAAAAACAATCCCTTTTT CAAAATTGGAAGCAATTCAAAACGAACACGATTTTGAACACTACTTGTGC CTTCATTATATTCTTCATCTGGACGTTTGTAAAGCTCTTCAACAGTACGA TACGCTTCTAAGGAGCGCTCCAGAAAAAATATTGAGAGTGCACAAATCCT GAGGATCTCCAAATCATTTGGCAAAAAATGTGCAATTGTTTTATAAATTA GACATTTAGTTTTGGGATCATCATGAAGGTCGAGTTGTAGAGCACAACCA CATATTTCAACACAAATTTGCAAGCCTTCTTCTTCAACCTGTAAAAAGAA AAATATTAGTGCTAAATACTTTTTTTCCAAAAAAATGGTTATACTAGTCT ATCTTTAAAAAACACAACTCTTAAAATGAAAGCTGAATAAACATAGTATT CCAATGTCCAATTTTCCATATTTAGTAGCCTTGTTTAACTCTTTTAAATA TATACCTTTCTCTTTTTCTTAAACTTGAAAATAATCTGGAATAGATAGCA TTTTAGCTTCTAATTTATTTAATTTTCACATTTGACAAGCCCCACTATCC ATAATACAAAATGGACTTATGGTGATTCATAAACTTATGGTGATTAAGAT TTCTTCTAGACCCCCATTTATTATTGTAGGTACAAATCTCATATTCTTTG AGAGAAGGGTCAAAATTATGTGTATTTTAACAGATTTATCAATTTTCCAC ATCAAGAAATAAACTAGGCTTAAAAAAACTGCTTATGGGAACTTTTATTA TAGTGCTATATGAAAAAATATTACTTATTTTGCTTATTAAGTAATGTTAT TTATCCAAATAAGGGGGGAAATGTGGCACACATAAAGAAGGCAGTTATAA TCTTTCCAAATCTAATAAGGTATATAAGCCTCAGAATAATGAGCCCCCTG GAAGTTATCTGAACAGTACTCAAGCTTTGAAACATTCACTGATGACTCAA GGATAATTGCATCAGCTTTTACTTGGGAATCTATTGTCGACCCATCTTAG TTATAATAGTGTCTCTAGTGGTTTGGAATAATCTAAAGGCTTATTTTGAT TGGAGGAGACACCATAATAATGTCTTTAACATCATATATATGTATATATA TCATACTGCCTACATATGGTATAGTATAGATTACAGGGAGGAATACTACC TTGCCAGCCTCACGTTTTCTTAGTCCTTTACATGCTGTGTAACCCTGAAG AACTACTTACAGTTCCCACAGGCAGACTTTAACTTGGCACATCCGATTTT CACTTTATCCAGCTAGTAAATTCCTACTGATCCTCCTATTCATTCTTTGA GAATCAGTTCTAATCTGAAGGTTTTTCTCCCCACTTATCCTGGTCTCTGC CCTGAGGTACAGTTAAAATTCCCCATTCTTTCCACCAAGAATAACTTATC TTTAAAAACATTTCAATTTTGTTTTATAAATATCTGTGTATGTGTATGTC CTCACCCCCCAACTGTGAATTCCTAAATTACAGGTGACAGTGTCTCATTT TTTATGTCTCCCTATGGTTAGCATAAAAGTTGGTACATAGTAACCTCTGA ATAAATGTTTGCAGAATGAGTGAAAATCAGACCTATTCCATTTACTTAGT TTGCTCCTATAAATCCATCATTTACAACTTGGAATCCTTTCTGAATTCCA ACTACTGATTTCTAAATGTCAATTATAATTAGACTTTACTACCTAGATTT TTCAGATACAGCAAATCAAAATCCATTCATTCAAAACAGAATTCGTTTTC TTTCTCCATACTTCTATCTACATCCTTTTTTTTTTTTTTTTTTTTTTTGA GACAGAGTCTCGCACTGTCACCCAGGCTGGAGTAGAATGGCACGATCTCA GCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGC CTCCCCAGTAGCTGGGACTACAGGCGTGAGCCACCACACTTGGCTAATTT TTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCTT GAACTTCTGGCCTCAAGTGATCTGCCCACCTCGGCATCCCAAAGTACTGG GATTACTGGTGTAAGCCATTGCGCCCAGCCTACATCCTCTATCTTGGCTC ATAAAATTATCATGTATACAGATGCTCAAGTTTAAAAATGTTAAGATCAT CCAAAAAGAGAACAGGCTGCTTCCTTACCTGAAATCTTTTGATGGTTCCA GGATATTTATGAATTTTCAATTTGTTCAATGAAATGAATGAACTGTTGCA TTCAAATCCCTTTAAGTATCTCCGACAACCACTCCTCCTAACACACACAG TCTCTGCCATTAGTCTCATCCCCCACCCACTTCCCCATATTTCTCTGCTA CCCTTTAATGTCACCAGATGGTTGTGAAAAACAAATAATAAAATGAGGAA AAAGTGCTCTGTAAACTACAAAATTCTCTACAAATGTTAGTACTACCCTC ATGTCATTGAAAACTCAGCTGAAATTATTTCCTCTGTGAACCCTTTTTAG ATATGCCATCTATGTCTCCTGAACTCACACAGTATTTATGACTCTTCATA GTACTGAGGCAATTGAATGATTTATTCCAACAAATAAAAGTCTTTTTAGT AGAGTATAAACTATTAAGCATCATATTTTTAATACTTATTTCATCTTTGA ATTTTCCTTTTATAATATATTTGCAGGTTTACCCCACATATGAAAATAAG AAAGCTCTGTGATGACTGGCAAAACCTCACACTGTAAACTTTCTATAATA ATATATCTCAATTTTTGGTACCAATAAGATTCATATGTACAAAAATATGG ATACATCTTTATTGTTTAAAATTAAGTTTTACAGGTGATTCTGATGCACA TCAAATGTTAAGACGTGTTCTGTAACATAGTTTTCCTCTTTTGCTGGAAG GAGTTTACTTTGAGAATGCATTTGAATGATATTTCACTATTTAATAAGCA TACCATAAATGCAGTTAGCGAAATTATCATGGGAATATGATCACTACATG ATCATACATCTAATGAGTGATGTGATAATGAATGTAATAAATGCATAAAT ACATAAAAAAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0031043
Genomic location
Chromosome
3
Location
3p11.1
Position
88185088- 88188592
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000447110
Predicted CDS
2286..2585; 99[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.683
NGTISAHCNLCLPGSSNSPASASPVAGTTGVSHHTWLIFVFLVEMGFHHV GQTGLELLASSDLPTSASQSTGITGVSHCAQPTSSILAHKIIMYTDAQV*
Gene function information
H-Inv ID
HIT000089604
H-Inv cluster ID
HIX0031043
Accession number
BC018424.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
Protein evidence
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000447110
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear; Other;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
1561669_at;
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2632037; 2632038; 2685058;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
132 .. 132
T/C
rs202216157
-
5'UTR
173 .. 173
T/C
rs9813894
-
5'UTR
194 .. 194
T/G
rs200300980
-
5'UTR
197 .. 197
G/A
rs140910532
-
5'UTR
237 .. 237
C/G
rs185706322
-
5'UTR
254 .. 254
G/A
rs193026684
-
5'UTR
256 .. 256
G/A
rs146443196
-
5'UTR
308 .. 308
G/A
rs58079813
-
5'UTR
575 .. 575
A/T
rs111595164
-
5'UTR
618 .. 618
T/G
rs187940633
-
5'UTR
887 .. 887
A/G
rs140069657
-
5'UTR
903 .. 903
T/C
rs182105516
-
5'UTR
933 .. 933
A/G
rs75822676
-
5'UTR
939 .. 939
G/A
rs189616637
-
5'UTR
991 ^ 992
-/C
rs11456258
-
5'UTR
994 .. 994
A/C
rs202202891
-
5'UTR
994 ^ 995
-/C
rs76277832
-
5'UTR
1038 .. 1038
T/C
rs55744603
-
5'UTR
1057 .. 1057
T/C
rs76094243
-
5'UTR
1268 ^ 1269
-/C
rs11425792
-
5'UTR
1429 .. 1429
A/C
rs151230729
-
5'UTR
1439 .. 1439
G/A
rs142215320
-
5'UTR
1542 .. 1542
G/A
rs60377014
-
5'UTR
1695 .. 1695
G/A
rs113316554
-
5'UTR
1757 .. 1757
G/A
rs59098936
-
5'UTR
2066 .. 2066
C/T
rs147615800
-
5'UTR
2095 .. 2095
A/T
rs145193990
-
5'UTR
2224 .. 2224
C/T
rs79210069
-
5'UTR
2225 .. 2225
C/T
rs76571256
-
5'UTR
2261 .. 2261
C/T
rs139996861
-
5'UTR
2293 .. 2293
C/T
rs9836364
-
CDS
Nonsynonymous[Thr3Met]
2389 .. 2389
C/T
rs138689453
-
CDS
Nonsynonymous[Thr35Ile]
2421 .. 2421
G/C
rs139685518
-
CDS
Nonsynonymous[Gly46Arg]
2520 .. 2520
T/C
rs7651641
-
CDS
Nonsynonymous[Cys79Arg]
2813 .. 2813
A/C
rs78005350
-
3'UTR
2814 .. 2814
C/A
rs76408385
-
3'UTR
2999 .. 2999
T/C
rs4518156
-
3'UTR
3084 .. 3084
A/T
rs4507280
-
3'UTR
3128 .. 3128
T/G
rs35408771
-
3'UTR
3314 .. 3314
C/T
rs187141875
-
3'UTR
3384 .. 3384
T/A
rs116400697
-
3'UTR
3489 .. 3489
A/C
rs182487295
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
L2c
1733
2024
+
AluSz
2226
2530
-
MIRc
2798
2890
+
MER5A
3263
3313
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;