H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000089604 Accession number: BC018424 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number BC018424.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:4508536
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 3519[bp] (No. of exon:1)[A:1103 T:1203 G:510 C:703]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Testis, embryonal carcinoma
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 3505(+) Signal: 3486-3490(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0031043
Genomic location  G-integra Help Chromosome 3
Location 3p11.1
Position 88185088- 88188592
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000447110
Predicted CDS 2286..2585;  99[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.683

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000089604
H-Inv cluster ID Locus viewHIX0031043
Accession number BC018424.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000447110
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1561669_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2632037;  2632038;  2685058; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
132 .. 132 T/C rs202216157 - 5'UTR
173 .. 173 T/C rs9813894 - 5'UTR
194 .. 194 T/G rs200300980 - 5'UTR
197 .. 197 G/A rs140910532 - 5'UTR
237 .. 237 C/G rs185706322 - 5'UTR
254 .. 254 G/A rs193026684 - 5'UTR
256 .. 256 G/A rs146443196 - 5'UTR
308 .. 308 G/A rs58079813 - 5'UTR
575 .. 575 A/T rs111595164 - 5'UTR
618 .. 618 T/G rs187940633 - 5'UTR
887 .. 887 A/G rs140069657 - 5'UTR
903 .. 903 T/C rs182105516 - 5'UTR
933 .. 933 A/G rs75822676 - 5'UTR
939 .. 939 G/A rs189616637 - 5'UTR
991 ^ 992 -/C rs11456258 - 5'UTR
994 .. 994 A/C rs202202891 - 5'UTR
994 ^ 995 -/C rs76277832 - 5'UTR
1038 .. 1038 T/C rs55744603 - 5'UTR
1057 .. 1057 T/C rs76094243 - 5'UTR
1268 ^ 1269 -/C rs11425792 - 5'UTR
1429 .. 1429 A/C rs151230729 - 5'UTR
1439 .. 1439 G/A rs142215320 - 5'UTR
1542 .. 1542 G/A rs60377014 - 5'UTR
1695 .. 1695 G/A rs113316554 - 5'UTR
1757 .. 1757 G/A rs59098936 - 5'UTR
2066 .. 2066 C/T rs147615800 - 5'UTR
2095 .. 2095 A/T rs145193990 - 5'UTR
2224 .. 2224 C/T rs79210069 - 5'UTR
2225 .. 2225 C/T rs76571256 - 5'UTR
2261 .. 2261 C/T rs139996861 - 5'UTR
2293 .. 2293 C/T rs9836364 - CDS Nonsynonymous[Thr3Met]
2389 .. 2389 C/T rs138689453 - CDS Nonsynonymous[Thr35Ile]
2421 .. 2421 G/C rs139685518 - CDS Nonsynonymous[Gly46Arg]
2520 .. 2520 T/C rs7651641 - CDS Nonsynonymous[Cys79Arg]
2813 .. 2813 A/C rs78005350 - 3'UTR
2814 .. 2814 C/A rs76408385 - 3'UTR
2999 .. 2999 T/C rs4518156 - 3'UTR
3084 .. 3084 A/T rs4507280 - 3'UTR
3128 .. 3128 T/G rs35408771 - 3'UTR
3314 .. 3314 C/T rs187141875 - 3'UTR
3384 .. 3384 T/A rs116400697 - 3'UTR
3489 .. 3489 A/C rs182487295 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L2c 1733 2024 +
AluSz 2226 2530 -
MIRc 2798 2890 +
MER5A 3263 3313 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer