H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000088897 Accession number: BC016013 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number BC016013.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:4695648
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1400[bp] (No. of exon:1)[A:422 T:467 G:286 C:225]
Devision HTC
Molecular type mRNA
Library origin Cell type NA
Tissue type Lung
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 1371(+) Signal: 1354-1358(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0031039
Genomic location  G-integra Help Chromosome 3
Location 3p11.1
Position 88214246- 88215617
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:285237
KEGG GENES KEGG GENES(285237)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000042706
Predicted CDS 922..1170;  82[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.796

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000088897
H-Inv cluster ID Locus viewHIX0031039
Accession number BC016013.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000042706
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:285237
KEGG GENES KEGG GENES(285237)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear;  cytosol;  extracellular; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1569128_at;  1569129_s_at; 
HG-U95 68096_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D 68096_at; 
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2632069;  2685065;  2685067; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
34 .. 34 T/G rs11705980 + 5'UTR
37 .. 37 T/C rs9865335 + 5'UTR
153 .. 153 A/C rs188955728 + 5'UTR
225 .. 225 C/T rs9814057 + 5'UTR
273 .. 273 A/G rs181192747 + 5'UTR
455 .. 455 G/A rs78034301 + 5'UTR
498 .. 498 A/G rs186492803 + 5'UTR
535 .. 535 G/A rs141260080 + 5'UTR
589 .. 589 G/A rs75071856 + 5'UTR
607 .. 607 C/G rs190939646 + 5'UTR
633 .. 633 T/C rs182456938 + 5'UTR
673 .. 673 A/G rs71322823 + 5'UTR
690 .. 690 A/C rs146711119 + 5'UTR
727 .. 727 T/C rs115909617 + 5'UTR
858 .. 858 A/G rs186145648 + 5'UTR
902 ^ 903 -/C rs200927196 + 5'UTR
903 .. 903 T/C rs12486373 + 5'UTR
923 .. 923 T/C rs6419866 + CDS Nonsynonymous[Met1Thr]
1003 .. 1003 C/T rs190861884 + CDS AA-STOP[Arg28*]
1031 .. 1031 G/A rs183374467 + CDS Nonsynonymous[Ser37Asn]
1061 .. 1061 C/T rs35620270 + CDS Nonsynonymous[Pro47Leu]
1073 .. 1073 G/A rs146825161 + CDS Nonsynonymous[Cys51Tyr]
1098 .. 1098 A/T rs7426645 + CDS Synonymous[Ser59Ser]
1167 .. 1167 G/A rs140326094 + CDS Synonymous[Leu82Leu]
1333 .. 1333 T/C rs115428245 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluSg 901 1199 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer