H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
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---
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H-Invitational ID:
HIT000084773
Accession number:
AY150218
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AY150218.1
CAGE tag ID
NA
EST ID
NA
Clone Number
NA
Experimental resources
NBRC
;
HGPD
;
Antibody (ACBD3)
;
Catalog (ACBD3)
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
3572[bp] (No. of exon:8)[A:1067 T:1012 G:827 C:665]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
placenta
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
Site: 3541(+) Signal: 3523-3527(+)
Vector/adapter sequence
NA
Frame shift
1175-1175[bp] Insertion(T); 1219-1220[bp] Deletion(G);
Remaining intron
NA
Splice site acceptor (NAGNAG)
CAGGAG;
Transcript quality feature
NA
Notes
NA
CCGCTGAGGAGGTGCAGCAGCCGGAGATGGCGGCGGTGCTGAACGCAGAG CGACTCGAGGTGTCCGTCGACGGCCTCACGCTCAGCCCGGACCCGGAGGA GCGGCCTGGGGCGGAGGGCGCCCCGCTGCTGCCGCCACCGCTGCCACCGC CCTCGCCACCTGGATCCGGTCGCGGCCCGGGCGCCTCAGGGGAGCAGCCC GAGCCCGGGGAGGCGGCGGCTGGGGGCGCGGCGGAGGAGGCGCGGCGGCT GGAGCAGCGCTGGGGTTTCGGCCTGGAGGAGTTGTACGGCCTGGCACTGC GCCTCTTCAAAGAAAAAGATGGCAAAGCATTTCATCCAACTTATGAAGAA AAATTGAAGCTTGTGGCACTGCATAAGCAAGTTCTTATGGGCCCATATAA TCCAGACACTTGTCCTGAGGTTGGATTCTTTGATGTGTTGGGGAATGACA GGAGGAGAGAATGGGCAGCCCTGGGAAACATGTCTAAAGAGGATGCCATG GTGGAGTTTGTCAAGCTCTTAAATAGGTGTTGCCATCTCTTTTCAACATA TGTTGCGTCCCACAAAATAGAGAAGGAAGAGCAAGACAAAAAAAGGAAGG AGGAAGAGGAGCGAAGGCGGCGTGAAGAGGAAGAAAGAGAGCGTCTGCAA AAGGAGGAAGAGAAACGTAGGAGAGAAGAAGAGGAAAGGCTTCGACGGGA GGAAGAGGAAAGGATACGGATAGAAGAAGAAAGGCTTCGGTTGGAGCAGC AAAAGCAGCAGATAATGGCAGCTTTAAACTCCCAGACTGCCGTGCAGTTC CAGCAGTATGCAGCCCAACGGTATCCAGGGAACTACGAACAGCAGCAAAT TCTCATCCGCCAGTTGCAGGAGCAACACTATCAGCAGTACATGCAGCAGT TGTATCAAGTCCAGCTTGCACAGCAACAGGCAGCATTACAGAAACAACAG GAAGTAGTAGTGGCTGGGTCTTCCTTGCCTACATCATCAAAAGTGAATGC AACTGTACCAAGTAATATGATGCCAGTTAATGGACAGGCCAAAACACACA CTGACAGCTCCGAAAAAGAACTGGAACCAGAAGCTGCAGAAGAAGCCCTG GAGAATGGACCAAAAGAATCTCTTCCAGTAATAGCAGCTCCATCCATGTG GACACGACCTCAGATCAAAGACTTCAAAGAGAAGATTCAGCAGGATGCAG ATTCCGTGATTACAGTGGGCCGAGGAGAAGTGGTCACTGTTCGAGTACCC ACCCATGAAGAAGGATCATATCTCTTTTGGGAATTTGCCACAGACAATTG TGACATTGGGTTTGGGGTGTATTTTGAATGGACAGACTCTCCAAACACTG CTGTCAGCGTGCATGTCAGTGAGTCCAGCGATGACGACGAGGAGGAAGAA GAAAACATCGGTTGTGAAGAGAAAGCCAAAAAGAATGCCAACAAGCCTTT GCTGGATGAGATTGTGCCTGTGTACCGACGGGACTGTCATGAGGAGGTGT ATGCTGGCAGCCATCAATATCCAGGGAGAGGAGTCTATCTCCTCAAGTTT GACAACTCCTACTCTTTGTGGCGGTCAAAATCAGTCTACTACAGAGTCTA TTATACTAGATAAAAATGTTGTTACAAAGTCTGGAGTCTAGGGTTGGGCA GAAGATGACATTTAATTTGGAAATTTCTTTTTACTTTTGTGGAGCATTAG AGTCACAGTTTACCTTATTGATATTGGTCTGATGGTTTGTGAACTCTTGC TGGGAATCAAAATTTCCTTGAGACTCTTTAGCATTCATACTTTGGGGTTA AAGGAGATTCCTCAGACTCATCCAGCCCTTGGGTGCTGACCAGCAGAGTC ACTAGGGGATGCTGAAGTTACATGAGCTACATGTTAAATATTTAAAGTCT CCAAAATAAAACACCCCAACGTTGACCTTACCCGGCTGATGGTTAGCCCC TTGCTGCCTGCTCCATGTGTCTTATGAGAGCCCGTAGTTACAGTGTCCTC TAATTTGAAATCCATAAGTTAACAAGTCTATATCAGGTGCAGCTGGCTTT GATTAAAGGCCATTTTTAAAACTTAAAAACTCAACACCTCACAGATTATA ATAGAAAAAGAAATGGCCTCAGCTTGATCTCGTTCAGAATGACCCAGATT GTTTCTGCCTTGGGTGCAGCTGTTTAGTTCAGAGTTATATTACAGAGAAT TATTTTCTGAGATAATCTTAAACTAGAATGTTCAAAACTAATTGATAATT GAAGTATCAAGATACGTAGAACACCTCAGAGATTTTTCTTCAGGAACTTC CACAAACTTTGAATCCTTGTATCTTTATTTGGTATTCATACTACTAGTAG CAAAATACAGGTTTTTTGTTTTGTTTTGTTTTGTTTTGGCTTCATAGAGT ATCTCAAATTGAAACTTTTCTGCACAAAGAATAAAATTAAGGATTTTATA AACTCGAATTGGCACCTACTGAATTAAAATACATAAAATCATTTAAATAT AATTCAGCATATGGGAAGTAACATTGCACTAATATGGAAATCACTGCCAG AGACAGTCTATTTTCTTTTAATTTGTTACTACTTAGTCACAACCCCACAT TATTCCAGTTTGGAATTACTTATTAAGGAGAATTGGAAATACATGTGCCC ATGCTTAAATTTTATAGCTTTAATTTGTGTTATTTCTTTATTGACGGGAA GAGGTACATCTTTTTTTCCTTACTGAAAACAAATATGGATTAATTGCCTC AAATTTGTATAAAGTGATTGGCTAGTGATTCTTGTTTTCAGAGGGGAGAG TGGTATAGATAGAAAATGACGAAGATGGCAATATACACTTAATGTTGTTA TTGTATGTTGTTACTGAAGACTTAGATTTTTAAAATTTCAAATCCTAAAT CACTTCTTGTAGGGGGGTTTTCATTAACTGCAGTATATACAGTTCACTAC ATATGGGTTGTTTGAGTTTTTTGTGTGCTGTATTTCTTTCTGTTTTTTAA TACCTGGTTTTGTACATATCTAACTCTGTTCTCTTTTGGTTGTTCAGAAA CTGGATTTTTTTCTTCTTAAGCAGTGCTTAATTTGTGTTTTTTAATTTTG ATTCAGAAGTAGTCCCAGCTCATAGGCGTTCATACTGTTACATCCAGAAC ATTTGTCAGGCTCTCTGTCAGCTTTCATGTACATATGGTATAGAAACCAT GGAGTTAGGCACTTCCTGGATTTTTTTTATGAGAAAAATNCTGTATTTAA AATGTAAAATAAACTTTTAAAAAGCAGGCACTAATATATATTTCTTCCAG CCTTTGATTACAAATTTGTCCTTGCACATGTTAAGATGAATTATCTCCTA AAAATATCATTGTTCTTGGGAGCAGTGTATGTTACTTTACATAGCAGCGG TTCCTGTCATGTGTTCATGTCACGAATATTTTTGGTTTTAAACTTTCTTA TTGCCTTTGGCTGTTGATTAGTACAGTACAAGTGCGATTTCAAAAAGATC TTGAAAGTAATATATTTAATCAATTAAAATGTTTATCTGGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0001643
Genomic location
Chromosome
1
Location
1q42.12
Position
226332383- 226374402
Strand
-
Possible duplicated location(s)
NA
Gene structure
8 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:64746
;
KEGG GENES
KEGG GENES(64746)
;
GeneCard
ACBD3
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000024078
Predicted CDS
27..1613; 528[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.742
MAAVLNAERLEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPSPPGSGRG PGASGEQPEPGEAAAGGAAEEARRLEQRWGFGLEELYGLALRLFKEKDGK AFHPTYEEKLKLVALHKQVLMGPYNPDTCPEVGFFDVLGNDRRREWAALG NMSKEDAMVEFVKLLNRCCHLFSTYVASHKIEKEEQDKKRKEEEERRRRE EEERERLQKEEEKRRREEEERLRREEEERIRIEEERLRLEQQKQQIMAAL NSQTAVQFQQYAAQRYPGNYEQQQILIRQLQEQHYQQYMQQLYQVQLAQQ QAALQKQQEVVVAGSSLPTSSKVNATVPSNMMPVNGQAKTHTDSSEKELE PEAAEEALENGPKESLPVIAAPSMWTRPQIKDFKEKIQQDADSVITVGRG EVVTVRVPTHEEGSYLFWEFATDNCDIGFGVYFEWTDSPNTAVSVHVSES SDDDEEEEENIGCEEKAKKNANKPLLDEIVPVYRRDCHEEVYAGSHQYPG RGVYLLKFDNSYSLWRSKSVYYRVYYTR*
Motif information
a.a.
length
InterPro
Name
92
IPR000582
Acyl-CoA-binding protein, ACBP [Domain]
88
IPR000582
Acyl-CoA-binding protein, ACBP [Domain]
91
IPR014352
FERM/acyl-CoA-binding protein, 3-helical bundle [Domain]
88
IPR000582
Acyl-CoA-binding protein, ACBP [Domain]
19
IPR022408
Acyl-CoA-binding protein, ACBP, conserved site [Conserved_site]
143
IPR009038
GOLD [Domain]
55
IPR009038
GOLD [Domain]
131
IPR009038
GOLD [Domain]
53
IPR009038
GOLD [Domain]
Gene function information
H-Inv ID
HIT000084773
H-Inv cluster ID
HIX0001643
Accession number
AY150218.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Similar to Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9H3P7
) [Identity/coverage = 98.864%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
11590181
;
12665801
;
14702039
;
15489334
;
16710414
;
18691976
;
19690332
;
20068231
;
21269460
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
ACBD3
HGNC aliases
"golgi complex associated protein 1, 60kDa", "acyl-Coenzyme A binding domain containing 3"
HGNC name
acyl-CoA binding domain containing 3
DDBJ
NA
UniProt
ACBD3
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000024078
No. of interaction
25
Interaction partner(s)
HIP000021834
;
HIP000023033
;
HIP000025295
;
HIP000028585
;
HIP000028785
;
HIP000028936
;
HIP000029584
;
HIP000047440
;
HIP000049733
;
HIP000054007
;
HIP000055792
;
HIP000057104
;
HIP000060896
;
HIP000066454
;
HIP000066511
;
HIP000072624
;
HIP000072624
;
HIP000077623
;
HIP000088671
;
HIP000091231
;
HIP000091335
;
HIP000091335
;
HIP000095713
;
HIP000097882
;
HIP000103500
;
BIND
150193;
DIP
NA
MINT
MINT-61799;
HPRD
03933; 03990; 06901;
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:64746
;
KEGG GENES
KEGG GENES(64746)
;
GeneCard
ACBD3
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
acyl-CoA binding (
GO:0000062
);
Biological process
transport (
GO:0006810
);
Cellular component
integral to membrane (
GO:0016021
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear; cytosol;
Target P
Other
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
83
172
1hbkA
9e-14
16.3
86/89
a.11.1.1
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA060117; AGhsC010601;
Affymetrix
GeneChip
HG-Focus
202324_s_at;
HG-U133
202323_s_at; 202324_s_at;
HG-U133A
202323_s_at; 202324_s_at;
HG-U133A_2
202323_s_at; 202324_s_at;
HG-U133B
NA
HG-U133_Plus_2
202323_s_at; 202324_s_at;
HG-U95
36827_at; 89155_at;
HG-U95A
36827_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
89155_at;
HG-U95Av2
NA
HuEx-1_0
2383108; 2383111; 2458703; 2458704; 2458705; 2458706; 2458707; 2458710; 2458712; 2458714; 2458715; 2458716; 2458717; 2458718; 2458721; 2458722; 2458723; 2458724;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
A_24_P171182;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
1 .. 1
C/A
rs185630727
-
5'UTR
14 .. 14
G/A
rs200337750
-
5'UTR
47 .. 47
A/T
rs77797743
-
CDS
Synonymous[Ala7Ala]
486 .. 486
A/G
rs143911859
-
CDS
Nonsynonymous[Lys154Glu]
578 .. 578
A/G
rs149088607
-
CDS
Synonymous[Glu184Glu]
586 ^ 587
-/C
rs111701159
-
CDS
587 .. 587
C/A
rs2306120
-
CDS
Nonsynonymous[Asp187Glu]
605 .. 605
A/T
rs9730340
-
CDS
Nonsynonymous[Glu193Asp]
666 .. 666
C/T/G
rs112143123
-
CDS
667 .. 667
G/A
rs147538215
-
CDS
Nonsynonymous[Arg214His]
689 .. 689
G/C
rs191893895
-
CDS
Nonsynonymous[Arg221Ser]
711 .. 711
A/C
rs78919255
-
CDS
Synonymous[Arg229Arg]
712 .. 712
G/C
rs77727776
-
CDS
Nonsynonymous[Arg229Thr]
718 .. 718
G/A
rs145831627
-
CDS
Nonsynonymous[Arg231Gln]
734 .. 734
G/C
rs149848847
-
CDS
Nonsynonymous[Arg236Ser]
792 .. 792
G/A
rs200702189
-
CDS
Nonsynonymous[Val256Met]
815 .. 815
C/T
rs149492799
-
CDS
Synonymous[Ala263Ala]
899 .. 899
G/A
rs180969293
-
CDS
Synonymous[Gln291Gln]
923 .. 923
G/A
rs141482742
-
CDS
Synonymous[Gln299Gln]
952 .. 952
A/G
rs137989799
-
CDS
Nonsynonymous[Glu309Gly]
969 .. 969
T/G
rs199935319
-
CDS
Nonsynonymous[Ser315Ala]
1002 .. 1002
A/C
rs186444053
-
CDS
Nonsynonymous[Thr326Pro]
1018 .. 1018
T/C
rs141535126
-
CDS
Nonsynonymous[Met331Thr]
1090 .. 1090
A/G
rs144925748
-
CDS
Nonsynonymous[Glu355Gly]
1093 .. 1093
A/C
rs143544007
-
CDS
Nonsynonymous[Glu356Ala]
1110 .. 1110
C/T
rs199621655
-
CDS
Nonsynonymous[Pro362Ser]
1114 .. 1114
A/G
rs189746293
-
CDS
Nonsynonymous[Lys363Arg]
1199 .. 1199
A/T
rs201230026
-
CDS
Synonymous[Ala391Ala]
1203 .. 1203
T/G
rs148868431
-
CDS
Nonsynonymous[Ser393Ala]
1205 .. 1205
C/T
rs114674626
-
CDS
Synonymous[Ser393Ser]
1256 .. 1256
T/C
rs200054927
-
CDS
Synonymous[His410His]
1271 .. 1271
T/C
rs147875428
-
CDS
Synonymous[Tyr415Tyr]
1297 .. 1297
A/G
rs150683627
-
CDS
Nonsynonymous[Asn424Ser]
1304 .. 1304
C/T
rs149458367
-
CDS
Synonymous[Asp426Asp]
1314 .. 1314
G/A
rs142934805
-
CDS
Nonsynonymous[Gly430Arg]
1316 .. 1316
G/A
rs201959552
-
CDS
Synonymous[Gly430Gly]
1391 .. 1391
G/C
rs201638495
-
CDS
Nonsynonymous[Glu455Asp]
1409 .. 1409
C/T
rs146216214
-
CDS
Synonymous[Ile461Ile]
1444 .. 1444
A/G
rs17855715
-
CDS
Nonsynonymous[Lys473Arg]
1496 .. 1496
G/T
rs3211100
+
CDS
Nonsynonymous[Glu490Asp]
1557 .. 1557
T/C
rs113333885
-
CDS
Nonsynonymous[Ser511Pro]
1634 .. 1634
G/A
rs41304002
-
3'UTR
1640 .. 1640
A/T
rs1062716
+
3'UTR
1839 .. 1839
A/G
rs111803808
-
3'UTR
1927 .. 1927
C/T
rs146253707
-
3'UTR
1995 .. 1995
G/A
rs61835249
-
3'UTR
2144 .. 2144
C/G
rs143479832
-
3'UTR
2158 .. 2158
C/A
rs61835248
-
3'UTR
2361 .. 2361
G/A
rs190204079
-
3'UTR
2399 .. 2399
G/A
rs187412894
-
3'UTR
2549 .. 2549
A/G
rs182224919
-
3'UTR
2560 .. 2560
A/G
rs41314288
-
3'UTR
2723 .. 2723
C/T
rs41304004
-
3'UTR
2930 .. 2930
G/A
rs1043641
+
3'UTR
2939 .. 2939
A/T
rs189233972
-
3'UTR
3080 .. 3080
A/C
rs150591263
-
3'UTR
3104 .. 3104
C/A
rs183521976
-
3'UTR
3229 ^ 3230
-/T
rs138447017
-
3'UTR
3267 .. 3267
T/G
rs191189456
-
3'UTR
3276 .. 3276
A/C
rs188671316
-
3'UTR
3451 .. 3451
T/C
rs183942858
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;