H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000084773 Accession number: AY150218 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
 
 

Transcript original information
Accession number AY150218.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ACBD3) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ACBD3);
Sequence data provider NA
Annotation project NA
Length of cDNA 3572[bp] (No. of exon:8)[A:1067 T:1012 G:827 C:665]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type placenta
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 3541(+) Signal: 3523-3527(+)
Vector/adapter sequence NA
Frame shift 1175-1175[bp] Insertion(T); 1219-1220[bp] Deletion(G);
Remaining intron NA
Splice site acceptor (NAGNAG) CAGGAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0001643
Genomic location  G-integra Help Chromosome 1
Location 1q42.12
Position 226332383- 226374402
Strand -
Possible duplicated location(s) NA
Gene structure 8 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:64746
KEGG GENES KEGG GENES(64746)
GeneCard GeneCardACBD3*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000024078
Predicted CDS 27..1613;  528[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.742

Motif information
ORF

length(528),orf(27:1613)
MAAVLNAERLEVSVDGLTLSPDPEERPGAEGAPLLPPPLPPPSPPGSGRG
PGASGEQPEPGEAAAGGAAEEARRLEQRWGFGLEELYGLALRLFKEKDGK
AFHPTYEEKLKLVALHKQVLMGPYNPDTCPEVGFFDVLGNDRRREWAALG
NMSKEDAMVEFVKLLNRCCHLFSTYVASHKIEKEEQDKKRKEEEERRRRE
EEERERLQKEEEKRRREEEERLRREEEERIRIEEERLRLEQQKQQIMAAL
NSQTAVQFQQYAAQRYPGNYEQQQILIRQLQEQHYQQYMQQLYQVQLAQQ
QAALQKQQEVVVAGSSLPTSSKVNATVPSNMMPVNGQAKTHTDSSEKELE
PEAAEEALENGPKESLPVIAAPSMWTRPQIKDFKEKIQQDADSVITVGRG
EVVTVRVPTHEEGSYLFWEFATDNCDIGFGVYFEWTDSPNTAVSVHVSES
SDDDEEEEENIGCEEKAKKNANKPLLDEIVPVYRRDCHEEVYAGSHQYPG
RGVYLLKFDNSYSLWRSKSVYYRVYYTR*
a.a.
length
InterPro Name
length(92), motif(83:174) 92 IPR000582 Acyl-CoA-binding protein, ACBP [Domain]
length(88), motif(83:170) 88 IPR000582 Acyl-CoA-binding protein, ACBP [Domain]
length(91), motif(84:174) 91 IPR014352 FERM/acyl-CoA-binding protein, 3-helical bundle [Domain]
length(88), motif(84:171) 88 IPR000582 Acyl-CoA-binding protein, ACBP [Domain]
length(19), motif(104:122) 19 IPR022408 Acyl-CoA-binding protein, ACBP, conserved site [Conserved_site]
length(143), motif(384:526) 143 IPR009038 GOLD [Domain]
length(55), motif(390:444) 55 IPR009038 GOLD [Domain]
length(131), motif(397:527) 131 IPR009038 GOLD [Domain]
length(53), motif(475:527) 53 IPR009038 GOLD [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000084773
H-Inv cluster ID Locus viewHIX0001643
Accession number AY150218.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Golgi resident protein GCP60; Acyl-CoA-binding domain-containing protein 3; Golgi complex-associated protein 1; GOCAP1; Golgi phosphoprotein 1; GOLPH1; PBR- and PKA-associated protein 7; Peripheral benzodiazepine receptor-associated protein PAP7;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9H3P7)  [Identity/coverage = 98.864%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 115901811266580114702039154893341671041418691976196903322006823121269460ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ACBD3
HGNC aliases "golgi complex associated protein 1, 60kDa", "acyl-Coenzyme A binding domain containing 3"
HGNC name acyl-CoA binding domain containing 3
DDBJ NA
UniProt ACBD3
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000024078
No. of interaction 25
Interaction partner(s) HIP000021834HIP000023033HIP000025295HIP000028585HIP000028785HIP000028936HIP000029584HIP000047440HIP000049733HIP000054007HIP000055792HIP000057104HIP000060896HIP000066454HIP000066511HIP000072624HIP000072624HIP000077623HIP000088671HIP000091231HIP000091335HIP000091335HIP000095713HIP000097882HIP000103500
BIND 150193; 
DIP NA
MINT MINT-61799; 
HPRD 03933;  03990;  06901; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:64746
KEGG GENES KEGG GENES(64746)
GeneCard GeneCardACBD3*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function acyl-CoA binding (GO:0000062); 
Biological process transport (GO:0006810); 
Cellular component integral to membrane (GO:0016021); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear;  cytosol; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
83 172 1hbkA 9e-14 16.3 86/89 a.11.1.1
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA060117;  AGhsC010601; 
Affymetrix
GeneChip
HG-Focus 202324_s_at; 
HG-U133 202323_s_at;  202324_s_at; 
HG-U133A 202323_s_at;  202324_s_at; 
HG-U133A_2 202323_s_at;  202324_s_at; 
HG-U133B NA
HG-U133_Plus_2 202323_s_at;  202324_s_at; 
HG-U95 36827_at;  89155_at; 
HG-U95A 36827_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 89155_at; 
HG-U95Av2 NA
HuEx-1_0 2383108;  2383111;  2458703;  2458704;  2458705;  2458706;  2458707;  2458710;  2458712;  2458714;  2458715;  2458716;  2458717;  2458718;  2458721;  2458722;  2458723;  2458724; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P171182; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
1 .. 1 C/A rs185630727 - 5'UTR
14 .. 14 G/A rs200337750 - 5'UTR
47 .. 47 A/T rs77797743 - CDS Synonymous[Ala7Ala]
486 .. 486 A/G rs143911859 - CDS Nonsynonymous[Lys154Glu]
578 .. 578 A/G rs149088607 - CDS Synonymous[Glu184Glu]
586 ^ 587 -/C rs111701159 - CDS
587 .. 587 C/A rs2306120 - CDS Nonsynonymous[Asp187Glu]
605 .. 605 A/T rs9730340 - CDS Nonsynonymous[Glu193Asp]
666 .. 666 C/T/G rs112143123 - CDS
667 .. 667 G/A rs147538215 - CDS Nonsynonymous[Arg214His]
689 .. 689 G/C rs191893895 - CDS Nonsynonymous[Arg221Ser]
711 .. 711 A/C rs78919255 - CDS Synonymous[Arg229Arg]
712 .. 712 G/C rs77727776 - CDS Nonsynonymous[Arg229Thr]
718 .. 718 G/A rs145831627 - CDS Nonsynonymous[Arg231Gln]
734 .. 734 G/C rs149848847 - CDS Nonsynonymous[Arg236Ser]
792 .. 792 G/A rs200702189 - CDS Nonsynonymous[Val256Met]
815 .. 815 C/T rs149492799 - CDS Synonymous[Ala263Ala]
899 .. 899 G/A rs180969293 - CDS Synonymous[Gln291Gln]
923 .. 923 G/A rs141482742 - CDS Synonymous[Gln299Gln]
952 .. 952 A/G rs137989799 - CDS Nonsynonymous[Glu309Gly]
969 .. 969 T/G rs199935319 - CDS Nonsynonymous[Ser315Ala]
1002 .. 1002 A/C rs186444053 - CDS Nonsynonymous[Thr326Pro]
1018 .. 1018 T/C rs141535126 - CDS Nonsynonymous[Met331Thr]
1090 .. 1090 A/G rs144925748 - CDS Nonsynonymous[Glu355Gly]
1093 .. 1093 A/C rs143544007 - CDS Nonsynonymous[Glu356Ala]
1110 .. 1110 C/T rs199621655 - CDS Nonsynonymous[Pro362Ser]
1114 .. 1114 A/G rs189746293 - CDS Nonsynonymous[Lys363Arg]
1199 .. 1199 A/T rs201230026 - CDS Synonymous[Ala391Ala]
1203 .. 1203 T/G rs148868431 - CDS Nonsynonymous[Ser393Ala]
1205 .. 1205 C/T rs114674626 - CDS Synonymous[Ser393Ser]
1256 .. 1256 T/C rs200054927 - CDS Synonymous[His410His]
1271 .. 1271 T/C rs147875428 - CDS Synonymous[Tyr415Tyr]
1297 .. 1297 A/G rs150683627 - CDS Nonsynonymous[Asn424Ser]
1304 .. 1304 C/T rs149458367 - CDS Synonymous[Asp426Asp]
1314 .. 1314 G/A rs142934805 - CDS Nonsynonymous[Gly430Arg]
1316 .. 1316 G/A rs201959552 - CDS Synonymous[Gly430Gly]
1391 .. 1391 G/C rs201638495 - CDS Nonsynonymous[Glu455Asp]
1409 .. 1409 C/T rs146216214 - CDS Synonymous[Ile461Ile]
1444 .. 1444 A/G rs17855715 - CDS Nonsynonymous[Lys473Arg]
1496 .. 1496 G/T rs3211100 + CDS Nonsynonymous[Glu490Asp]
1557 .. 1557 T/C rs113333885 - CDS Nonsynonymous[Ser511Pro]
1634 .. 1634 G/A rs41304002 - 3'UTR
1640 .. 1640 A/T rs1062716 + 3'UTR
1839 .. 1839 A/G rs111803808 - 3'UTR
1927 .. 1927 C/T rs146253707 - 3'UTR
1995 .. 1995 G/A rs61835249 - 3'UTR
2144 .. 2144 C/G rs143479832 - 3'UTR
2158 .. 2158 C/A rs61835248 - 3'UTR
2361 .. 2361 G/A rs190204079 - 3'UTR
2399 .. 2399 G/A rs187412894 - 3'UTR
2549 .. 2549 A/G rs182224919 - 3'UTR
2560 .. 2560 A/G rs41314288 - 3'UTR
2723 .. 2723 C/T rs41304004 - 3'UTR
2930 .. 2930 G/A rs1043641 + 3'UTR
2939 .. 2939 A/T rs189233972 - 3'UTR
3080 .. 3080 A/C rs150591263 - 3'UTR
3104 .. 3104 C/A rs183521976 - 3'UTR
3229 ^ 3230 -/T rs138447017 - 3'UTR
3267 .. 3267 T/G rs191189456 - 3'UTR
3276 .. 3276 A/C rs188671316 - 3'UTR
3451 .. 3451 T/C rs183942858 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer