H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000082076 Accession number: AK075041 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Cyclin-T2 isoform a.
 
 

Transcript original information
Accession number AK075041.1
CAGE tag ID NA
EST ID NA
Clone Number OVARC1001086
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (CCNT2) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (CCNT2);
Sequence data provider NA
Annotation project NA
Length of cDNA 1595[bp] (No. of exon:2)[A:523 T:433 G:323 C:316]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type ovary, tumor tissue
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature Truncation; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0023917
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 135711348- 135713043
Strand +
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:905
KEGG GENES KEGG GENES(905)
GeneCard GeneCardCCNT2*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000017448
Predicted CDS 2..670;  222[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.753

Motif information
ORF

length(222),orf(2:670)
KRKLETLDLDVRDHYIAAQVEQQHKQGQSQAASSSSVTSPIKMKIPIANT
EKYMADKKEKSGSLKLRIPIPPTDKSASKEELKMKIKVSSSERHSSSDEG
SGKSKHSSPHISRDHKEKHKEHPSSRHHTSSHKHSHSHSGSSSGGSKHSA
DGIPPTVLRSPVGLSSDGISSSSSSSRKRLHVNDASHNHHSKMSKSSKSS
GGLRTSQHPRETGQEASGDQRS*
a.a.
length
InterPro Name
length(181), motif(37:217) 181 IPR028862 Cyclin-T2 [Family]
length(181), motif(37:217) 181 IPR015429 Cyclin C/H/T/L [Family]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000082076
H-Inv cluster ID Locus viewHIX0023917
Accession number AK075041.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Similar to Cyclin-T2 isoform a.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001232)  [Identity/coverage = 100.0%/33.48%] to Homo sapiens protein.
Experimental evidence Protein evidence
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol CCNT2
HGNC aliases NA
HGNC name cyclin T2
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000017448
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:905
KEGG GENES KEGG GENES(905)
GeneCard GeneCardCCNT2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function protein kinase binding (GO:0019901); 
Biological process regulation of cyclin-dependent protein kinase activity (GO:0000079);  regulation of transcription, DNA-dependent (GO:0006355);  transcription, DNA-dependent (GO:0006351); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT cytosol;  nuclear;  extracellular; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB020119; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 214638_s_at; 
HG-U133A 214638_s_at; 
HG-U133A_2 214638_s_at; 
HG-U133B NA
HG-U133_Plus_2 214638_s_at; 
HG-U95 32055_g_at; 
HG-U95A 32055_g_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2507256;  2507257;  2507258;  2507260;  2507261;  2507262;  2577641; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P209316; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P209316; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
79 .. 79 A/G rs186197893 + CDS Synonymous[Gln26Gln]
126 .. 126 A/G rs140243084 + CDS Nonsynonymous[Lys42Arg]
142 .. 142 C/T rs149104621 + CDS Synonymous[Ile47Ile]
159 .. 159 A/G rs201365431 + CDS Nonsynonymous[Tyr53Cys]
169 .. 169 T/C rs3814355 - CDS Synonymous[Asp56Asp]
299 .. 299 G/A rs146461929 + CDS Nonsynonymous[Gly100Ser]
310 .. 310 A/G rs3814354 - CDS Synonymous[Lys103Lys]
328 .. 328 A/G rs142358346 + CDS Synonymous[Pro109Pro]
374 .. 374 A/G rs190868744 + CDS Nonsynonymous[Ser125Gly]
375 ^ 376 -/C rs147879446 + CDS
422 .. 422 A/G rs182667340 + CDS Nonsynonymous[Ser141Gly]
462 .. 462 C/T rs185737486 + CDS Nonsynonymous[Pro154Leu]
473 .. 473 C/G rs138282554 + CDS Nonsynonymous[Leu158Val]
478 .. 478 G/T rs146155622 + CDS Nonsynonymous[Arg159Ser]
481 .. 481 T/C rs143160889 + CDS Synonymous[Ser160Ser]
522 .. 522 G/C rs148425067 + CDS Nonsynonymous[Ser174Thr]
527 .. 527 T/G rs200686479 + CDS Nonsynonymous[Ser176Ala]
625 .. 625 C/G rs199860380 + CDS Nonsynonymous[His208Gln]
642 .. 642 A/C rs144455981 + CDS Nonsynonymous[Gln214Pro]
643 .. 643 A/G rs141466269 + CDS Synonymous[Gln214Gln]
681 .. 681 G/A rs190052933 + 3'UTR
693 .. 693 A/G rs138728360 + 3'UTR
718 .. 718 A/G rs183192820 + 3'UTR
757 .. 757 G/C rs143713034 + 3'UTR
761 .. 761 G/T rs142947931 + 3'UTR
776 .. 776 T/C rs45569737 + 3'UTR
804 .. 804 T/G rs45492201 + 3'UTR
810 .. 810 T/A rs13425686 + 3'UTR
827 ^ 828 -/A rs35021589 + 3'UTR
951 .. 951 C/T rs138622899 + 3'UTR
1204 ^ 1205 -/A rs34968802 + 3'UTR
1340 .. 1340 A/G rs187480012 + 3'UTR
1440 .. 1440 C/G rs192617639 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer