H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000079775 Accession number: AF446131 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Non-protein-coding transcript, putative ncRNA.
 
 

Transcript original information
Accession number AF446131.1
CAGE tag ID NA
EST ID NA
Clone Number NA
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 523[bp] (No. of exon:1)[A:153 T:118 G:115 C:137]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature NA
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0036725
Genomic location  G-integra Help Chromosome 12
Location 12q24.22
Position 117889506- 117890028
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:4842
KEGG GENES KEGG GENES(4842)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000079775
H-Inv cluster ID Locus viewHIX0036725
Accession number AF446131.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Non-protein-coding; 
Definition Non-protein-coding transcript, putative ncRNA.
Classification of non-protein-coding transcripts Classification: Putative ncRNA
Type: both
NA
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID NA
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:4842
KEGG GENES KEGG GENES(4842)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
FR ID FR108517
Accession
Description
Location
PMID


Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3473584;  3473585; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:27-May-2015
Disease relation Disease name: {Pyloric stenosis, infantile hypertrophic, 1, susceptibility to} (179010); 
Related information in OMIM OMIM ID:  163731;  Title: NITRIC OXIDE SYNTHASE 1
Co-localized orphan diseases NA
Disease related mutation MutationView:  163731
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(4842)
Disease Entrez Gene ID:(4842)
Substance Entrez Gene ID:(4842)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
9 .. 9 C/T rs10850829 -
51 .. 51 G/T rs7972321 -
69 .. 69 G/A rs2650172 +
88 .. 88 C/T rs76904290 -
90 .. 90 G/A rs74757759 -
102 .. 102 G/A rs2650173 +
199 .. 199 C/T rs33997921 -
202 .. 202 C/T rs146608811 -
221 .. 221 C/T rs114850471 -
260 .. 260 T/C rs10850828 -
366 .. 366 G/A rs115677595 -
384 .. 384 G/A rs144364603 -
402 .. 402 A/G rs12316447 -
464 .. 464 G/A rs139769325 -
511 .. 511 G/T rs1093320 -
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIR1_Amn 189 239 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer