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H-Invitational ID: HIT000075908 Accession number: AF274952 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Acyl-coenzyme A thioesterase 13 isoform 1.

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number AF274952.1 CAGE tag ID NA EST ID NA Clone Number NA Experimental resources   NBRC ; HGPD ; Antibody (ACOT13) ; Catalog (ACOT13); Sequence data provider NA Annotation project NA Length of cDNA 704[bp] (No. of exon:3)[A:236 T:155 G:157 C:156] Devision HUM Molecular type mRNA Library origin Cell type acute promyelocytic leukemia Tissue type NA Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA Site: 681(+) Signal: 664-668(+) Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

GCTGCCAGCTCGCCTGACTCCCGGCCTCTTGCGCTCCTAGGGGCGGAGAA GGGTGCGGGCTCTTCGCCCTTTGTGTCCTCCTTCTTTCACTAACTTCTGG ACTTTCCAGCTCTTCCGAAGTTCGTTCTTGCGCAAAGCCCAAAGGCTGGA AAACCGTCCACGATGACCAGCATGACTCAGTCTCTGCGGGAGGTGATAAA GGCCATGACCAAGGCTCGCAATTTTGAGAGAGTTTTGGGAAAGATTACTC TTGTCTCTGCTGCTCCTGGGAAAGTGATTTGTGAAATGAAAGTAGAAGAA GAGCATACCAATGCAATAGGCACTCTCCACGGCGGTTTGACAGCCACGTT AGTAGATAACATATCAACAATGGCTCTGCTATGCACGGAAAGGGGAGCAC CCGGAGTCAGTGTCGATATGAACATAACGTACATGTCACCTGCAAAATTA GGAGAAGATATAGTGATTACAGCACATGTTCTGAAGCAAGGAAAAACACT TGCATTTACCTCTGTGGATCTGACCAACAAGGCCACAGGAAAATTAATAG CACAAGGAAGACACACAAAACACCTGGGAAACTGAGAGAACAGCAGAATG ACCTAAAGAAACCCAACAATGAATATCAAGTATAGATTTGACTCAAACAA TTGTAATTTTTGAAATAAACTAGCAAAATCAAAAAAAAAAAAAAAAAAAA AAAA

Gene structure information

H-Inv cluster ID		HIX0005626
Genomic location	Chromosome	6
	Location	6p22.3
	Position	24667330- 24701939
	Strand	+
Possible duplicated location(s)		NA
Gene structure		3 exon(s)
Database links	RefSeq	NM_018473;  NM_001160094;
	Ensembl	ENST00000230048;  ENST00000476436;  ENST00000537591;
	Entrez Gene	Entrez Gene ID:55856;
	KEGG GENES	KEGG GENES(55856);
	GeneCard	ACOT13;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000108746 Predicted CDS 163..585;  140[aa];  Orientation:+1;  Codon Adaptation Index (CAI). 0.697 Database links RefSeq NP_060943;  UniProt Q5R833;  Q9NPJ3;  CCDS CCDS4558;

MTSMTQSLREVIKAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTN AIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDI VITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLGN*

Gene function information

H-Inv ID		HIT000075908
H-Inv cluster ID		HIX0005626
Accession number		AF274952.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Acyl-coenzyme A thioesterase 13 isoform 1.
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (NP_060943)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence		Protein evidence
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	ACOT13
	HGNC aliases	"thioesterase superfamily member 2"
	HGNC name	acyl-CoA thioesterase 13
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000108746
	No. of interaction	1
	Interaction partner(s)	HIP000110321;
	BIND	NA
	DIP	24052E;
	MINT	NA
	HPRD	NA
	IntAct	EBI-989416;  EBI-989375;  EBI-989488;
Database links	RefSeq	NM_018473;  NM_001160094;
	Ensembl	ENST00000230048;  ENST00000476436;  ENST00000537591;
	Entrez Gene	Entrez Gene ID:55856;
	KEGG GENES	KEGG GENES(55856);
	GeneCard	ACOT13;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	cytosol;  nuclear;  mitochondria;
Target P	Not predicted
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP)

Last modified:20-Apr-2012

Start End PDB_ID E-value Identity Coverage SCOP_ID 13 135 2hboA1 1e-28 21.7 120/142 d.38.1.5

Related H-InvDB links GTOP

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	204565_at;
		HG-U133A	204565_at;
		HG-U133A_2	204565_at;
		HG-U133B	NA
		HG-U133_Plus_2	204565_at;
		HG-U95	41057_at;
		HG-U95A	41057_at;
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2898563;  2898564;  2898568;  2898569;  2945674;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	NA
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:NA Title:NA
Co-localized orphan diseases		OMIM ID:  122550;  143400;  604519;  608545;  610294;  611724;  612558;
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	Entrez Gene ID:(55856)
	Disease	Entrez Gene ID:(55856)
	Substance	Entrez Gene ID:(55856)
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 76 .. 78 TCC/- rs17243150 - 5'UTR 77 .. 77 C/T rs115122495 + 5'UTR 80 .. 82 CCT/- rs28364821 - 5'UTR 172 .. 172 A/G rs76659610 + CDS Nonsynonymous[Met4Val] 348 .. 348 G/A rs7765904 + CDS Synonymous[Thr62Thr]  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;