H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000066944 Accession number: AF086065 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Hypothetical short protein.
 
 

Transcript original information
Accession number AF086065.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE:282869
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (KIAA0319) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (KIAA0319);
Sequence data provider NA
Annotation project NA
Length of cDNA 477[bp] (No. of exon:1)[A:157 T:135 G:104 C:81]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 468(+) Signal: 447-451(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0005624
Genomic location  G-integra Help Chromosome 6
Location 6p22.3
Position 24544587- 24545054
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NM_014809NM_001168374NM_001168375NM_001168376NM_001168377
Ensembl ENST00000378214ENST00000430948ENST00000535378ENST00000537886ENST00000543707
Entrez Gene Entrez Gene ID:9856
KEGG GENES KEGG GENES(9856)
GeneCard GeneCardKIAA0319*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000061632
Predicted CDS 126..242;  38[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.69

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000066944
H-Inv cluster ID Locus viewHIX0005624
Accession number AF086065.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID HIF0004245
Gene family/group name Human gene family/group candidate, HIF0004245.
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol KIAA0319
HGNC aliases NA
HGNC name KIAA0319
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000061632
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_014809NM_001168374NM_001168375NM_001168376NM_001168377
Ensembl ENST00000378214ENST00000430948ENST00000535378ENST00000537886ENST00000543707
Entrez Gene Entrez Gene ID:9856
KEGG GENES KEGG GENES(9856)
GeneCard GeneCardKIAA0319*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Human gene family/group candidate, HIF0004245. Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT mitochondria;  endoplasmic;  extracellular;  peroxisome; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL neural; 
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 206017_at; 
HG-U133A 206017_at; 
HG-U133A_2 206017_at; 
HG-U133B NA
HG-U133_Plus_2 206017_at; 
HG-U95 39589_at; 
HG-U95A 39589_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 NA
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P166397; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  122550143400604519608545610294611724612558
Disease related mutation
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(9856)
Disease Entrez Gene ID:(9856)
Substance Entrez Gene ID:(9856)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
69 .. 69 T/G rs78066205 - 5'UTR
88 .. 88 G/A rs16889440 - 5'UTR
152 .. 152 T/C rs699463 - CDS Synonymous[His9His]
154 .. 154 G/A rs2760183 + CDS Nonsynonymous[Arg10Lys]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer