H-InvDB - Transcript view HIT000066944

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H-Invitational ID:	HIT000066944	Accession number:	AF086065	Created date:	26-Mar-2013	Last modified:	20-Apr-2012
Definition:	Hypothetical short protein.

Transcript original information

Accession number		AF086065.1
CAGE tag ID		NA
EST ID		NA
Clone Number		IMAGE:282869
Experimental resources		NBRC ; HGPD ; Antibody (KIAA0319) ; Catalog (KIAA0319);
Sequence data provider		NA
Annotation project		NA
Length of cDNA		477[bp] (No. of exon:1)[A:157 T:135 G:104 C:81]
Devision		HUM
Molecular type		mRNA
Library origin	Cell type	NA
	Tissue type	NA
	Develpmental stage	NA

Sequence quality information

CDS feature	Complete CDS
Kozak sequence	NA
PolyA	Site: 468(+) Signal: 447-451(+)
Vector/adapter sequence	NA
Frame shift	NA
Remaining intron	NA
Splice site acceptor (NAGNAG)	NA
Transcript quality feature	NA
Notes	NA

ATCAGAACAAAGCACGAGATGGAATGACCAACCAGCATTCTTCATGGTGG
ACTGCTTATCATTGAGGATCTTTGGGAGATAAAGCACGCTAAGAGCTCTG
GACAGAGAAAAACAGGCCCTAGAATATGGGAGTGGGTGTTTGTAGGGCTC
ATAGGCTAACAAGCACTTTAGTTGCTGGTTTACATTCAATGAAGGAGGAT
TCATACCCATGGCATTACAAGGCTAAGCATGTGTATGACTAAGGAACTAT
CTGAAAAACATGCAGCAAGGTAAGAAAATGTACCACTCAACAAGCCAGTG
ATGCCACCTTTTGTGCGCGGGGAGGAGAGTGACTACCATTGTTTTTTGTG
TGACAAAGCTATCATGGACTATTTTAATCTTGGTTTTATTGCTTAAAATA
TATTATTTTTCCCTATGTGTTGACAAGGTATTTCTAATATCACACTATTA
AATATATGCACTAATCTAAAAAAAAAA

Gene structure information

H-Inv cluster ID		HIX0005624
Genomic location	Chromosome	6
	Location	6p22.3
	Position	24544587- 24545054
	Strand	-
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NM_014809; NM_001168374; NM_001168375; NM_001168376; NM_001168377;
	Ensembl	ENST00000378214; ENST00000430948; ENST00000535378; ENST00000537886; ENST00000543707;
	Entrez Gene	Entrez Gene ID:9856;
	KEGG GENES	KEGG GENES(9856);
	GeneCard	KIAA0319; *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS; G-integra; cDNA-genome alignment;

Predicted CDS information

HIP ID		HIP000061632
Predicted CDS		126..242; 38[aa]; Orientation:+3;
Codon Adaptation Index (CAI).		0.69

MGVGVCRAHRLTSTLVAGLHSMKEDSYPWHYKAKHVYD*

Gene function information

H-Inv ID		HIT000066944
H-Inv cluster ID		HIX0005624
Accession number		AF086065.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Hypothetical short protein.
Similarity category		Category: Hypothetical short protein(Category VI).
Similarity category		Hypothetical short protein.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	HIF0004245
	Gene family/group name	Human gene family/group candidate, HIF0004245.
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	KIAA0319
	HGNC aliases	NA
	HGNC name	KIAA0319
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000061632
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_014809; NM_001168374; NM_001168375; NM_001168376; NM_001168377;
	Ensembl	ENST00000378214; ENST00000430948; ENST00000535378; ENST00000537886; ENST00000543707;
	Entrez Gene	Entrez Gene ID:9856;
	KEGG GENES	KEGG GENES(9856);
	GeneCard	KIAA0319; *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Human gene family/group candidate, HIF0004245. Similarity Search Tool; TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT

mitochondria; endoplasmic; extracellular; peroxisome;

Target P

Not predicted

SOSUI

soluble protein

TMHMM

soluble protein

PTS1

Not targeted

Related H-InvDB links

LIFEdb;

JRE-1.4.0 or later is required.

Download JRE at Sun's web site.

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			neural;
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	206017_at;
		HG-U133A	206017_at;
		HG-U133A_2	206017_at;
		HG-U133B	NA
		HG-U133_Plus_2	206017_at;
		HG-U95	39589_at;
		HG-U95A	39589_at;
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	NA
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
	Agilent	Whole Human Genome Oligo Microarray:PGID247	A_24_P166397;
Related H-InvDB links			H-ANGEL; DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:NA Title:NA
Co-localized orphan diseases		OMIM ID: 122550; 143400; 604519; 608545; 610294; 611724; 612558;
Disease related mutation		JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	Entrez Gene ID:(9856)
	Disease	Entrez Gene ID:(9856)
	Substance	Entrez Gene ID:(9856)
Related H-InvDB links		DiseaseInfo Viewer; LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel
Location	Variation	dbSNP ID	Strand	CDS/UTR	Translation
69 .. 69	T/G	rs78066205	-	5'UTR
88 .. 88	G/A	rs16889440	-	5'UTR
152 .. 152	T/C	rs699463	-	CDS	Synonymous[His9His]
154 .. 154	G/A	rs2760183	+	CDS	Nonsynonymous[Arg10Lys]

Microsatellite (Short Tandem Repeat, STR)
No data available

Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available

Repeat
No data available

Database links	Human-Gene diversity Of Life-style related Diseases(H-GOLD);
Related H-InvDB links	VaryGene; Repeat Mask Viewer;