H-InvDB_9.0 released on May 27, 2015.
Search by
Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt
for
Advanced Search
Home
Quick guide
Navi
BLAST
Site map
Download
Contact us
Help
H-Invitational ID:
HIT000064640
Accession number:
AF055029
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AF055029.1
CAGE tag ID
NA
EST ID
NA
Clone Number
IMAGE Consortium 24711
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
NA
Annotation project
NA
Length of cDNA
1835[bp] (No. of exon:1)[A:473 T:527 G:435 C:400]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
brain
Develpmental stage
infant
Sequence quality information
CDS feature
N-truncated
Kozak sequence
NA
PolyA
Site: 1817(+) Signal: 1798-1802(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
ATCCATCCCTGTGGAGCTGCAGAGCATCTTCATGTGAGTAGACGGATGGA CATAAATAGATTCATGCTCATTTAGGAAGCTGGGAGTTTCGTGAAGCTGA GGGTGAGTTCCTGTGATTCTTGTTCGCTTCAACAAAAAGTGGGAGACCAA GTTTTTATAGCAAAAGACCAAATTAGCTGTAGAGTCTTGAATGCAGAAAA AAATTACCCTAGCTTTCTTAGCACTTAGGGTTTTGTGAGGATTCAGTGTT TAGCACAGTGCTTGGCACATAGTAAGCCCTAGTAAATGTTAAATATTGTT ATTAGTGTTTCGTAAAACTTGAGAAATAGAGCTGAGCTCATTCCCTTCCT GTTGATTCAAAAATAATACCTACATGAAAACATGATTCCAAGTTGATTGA ATGTTGTAGGAATTACTGGTTTAGAGTAGCCCAGTTCTCGGCCTACCCTG CTGGTTGGGATCTTACTGTATTCTTGAATGCACTGGTTTGAAAATATGCC AGACTTCAGCCCCCAAGGAAACAAGGCTGCAAGAATTTATGAACTCCAGC TGGAAAAGGTAAAGGTGACCTTTGGCTAGCCACATACTGGACCTTACCCC ACTGACGTCTTTCAGAACATTCCAAGGGTTTTCCTCAAGGAACATTTTTG AGCTAGAAATTAAAATGGGTTCTCTGGCAGACTGCACCCCTTGAGTCAAA GTTAACAGTATTCCTTTGAATGCAATAATAGAGGCTTTTCTGCGTTAAGG GAGAAGGAATGACCAATTGAACTTACACATTCCCCAGGCAGGTCCCTTTG CCGGCCCCTACAGGCTGGGGTGGCCCCTCCTGTCCTCAGGGATCAGACTC CCAGACTGGTTAGTTCTGCATGTTTCCATCAAATTAAAGGTTATTCCCTG GCCGCCTCCTGGAGAAAACCAACCCCACCCTGCCAGCTGGGGGCAATGGG GCAGGGATTTTGGCCTCTCAGAACAGCTCCTAGAGGCTGCTCATGACTGA ATGTTTTCCCAAATCACCTAAATATCGGTTTGCTTTTTGTTTTGGGGGAG AGGATTTAGCCTCTTACTTCCCTGATGGATTCAAAGTTTTATCTATCTCC TTATCTCCTGCCCTGTCTTGGCACAACTCTGGATAGATTGCAGGTGTGGA ATTTGCTGGAGTTTGGTGACTTCGTCAAATTCCTTTGGATTCTGTTCCGC CAAATCAGCAGTCTCGTCCTGTGGATGCAGTGACTGGAATTTCCCATCTG CAAAGCATCTCTGTAGCCCAGATTTTGTGGAGCCTTAAGACACTCCCTCA ATGCCACCCTGACCCCACGGCTGGAGAACCCTGTGCTTATGTGGTGGGCA GGGCCACTGTTGATGGAGGATGGCGGGGACGGGGTGGTGCTCAAAGGATC TGTGGTGCTGGAGGTCTACACGCCTCTCAGGACAGCGTGTCAGGAACCTC AGAGCAGCTTCACATCTGCCAAAGCTGAGAGGGAGCGAACTTGGGAAGCA TTTTGCTCATTGTCCTACCCAAGTATTAATAGCATAATAGTTGATGCCAA AGGAGATGGTGACGTCCCTTCCACTGTAGTTGCTGTCACAACCTTGACGT CTTTAAGCTAATGGCCGTTTGCATCTGTGTCTTCAAACAGATCCTGGTTA CAGCCATTTTGTGTGATTCACTTCGGGGGTTAAGTAATGCAGGATTCTGC AAACAAGGTGTCGCCGTCCAAATGTACTGTCCTGGCATAGAGAGCACTGC TTTGTTTTCCACTGTTGTAGAGAAAACTAGGGAGAACTTTATTTTTCAAT AAACTTTTCTTGTGTGAAAAAAAAAAAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0214561
Genomic location
Chromosome
2
Location
2q21.3
Position
135210376- 135212192
Strand
+
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:4249
;
KEGG GENES
KEGG GENES(4249)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000438751
Predicted CDS
1170..1478; 102[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.712
LRQIPLDSVPPNQQSRPVDAVTGISHLQSISVAQILWSLKTLPQCHPDPT AGEPCAYVVGRATVDGGWRGRGGAQRICGAGGLHASQDSVSGTSEQLHIC QS*
Gene function information
H-Inv ID
HIT000064640
H-Inv cluster ID
HIX0214561
Accession number
AF055029.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Coding potential
Protein coding;
Definition
Hypothetical protein.
Similarity category
Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000438751
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:4249
;
KEGG GENES
KEGG GENES(4249)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; cytosol; nuclear; Other;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb
;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
212098_at;
HG-U133A
212098_at;
HG-U133A_2
212098_at;
HG-U133B
NA
HG-U133_Plus_2
212098_at;
HG-U95
34866_at;
HG-U95A
34866_at;
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2507055; 2507056; 2507057; 2507058; 2577490; 2577491;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
15 .. 15
A/G
rs2290483
+
5'UTR
91 .. 91
G/A
rs80233518
+
5'UTR
186 .. 186
C/A
rs77355111
+
5'UTR
187 .. 187
T/C
rs190095207
+
5'UTR
336 .. 336
G/A
rs145994965
+
5'UTR
391 .. 391
A/G
rs192867568
+
5'UTR
406 .. 406
G/A
rs185809443
+
5'UTR
507 .. 507
C/T
rs139933732
+
5'UTR
648 .. 648
T/C
rs74398272
+
5'UTR
666 .. 666
T/C
rs142217514
+
5'UTR
709 .. 709
T/C
rs150808077
+
5'UTR
813 .. 813
G/-
rs34570178
+
5'UTR
845 .. 845
A/G
rs73960911
+
5'UTR
903 .. 903
C/T
rs139231308
+
5'UTR
1043 .. 1043
T/G
rs149984807
+
5'UTR
1053 .. 1053
G/T
rs189466732
+
5'UTR
1096 .. 1096
T/G
rs181049761
+
5'UTR
1135 .. 1135
A/G
rs79775263
+
5'UTR
1169 .. 1169
A/T
rs1041938
+
5'UTR
1174 .. 1174
G/C
rs34497810
+
CDS
Nonsynonymous[Arg2Pro]
1292 .. 1292
A/G
rs78024851
+
CDS
Synonymous[Thr41Thr]
1353 .. 1353
G/T
rs185159508
+
CDS
Nonsynonymous[Ala62Ser]
1486 .. 1486
C/T
rs7841
+
3'UTR
1571 .. 1571
C/A
rs147686678
+
3'UTR
1598 .. 1598
C/T
rs142454060
+
3'UTR
1651 .. 1651
C/G
rs144758484
+
3'UTR
1707 .. 1707
G/A
rs188693246
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
MIR
245
300
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;