H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000064640 Accession number: AF055029 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number AF055029.1
CAGE tag ID NA
EST ID NA
Clone Number IMAGE Consortium 24711
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider NA
Annotation project NA
Length of cDNA 1835[bp] (No. of exon:1)[A:473 T:527 G:435 C:400]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type brain
Develpmental stage infant
Mini-G
Sequence quality information
CDS feature N-truncated
Kozak sequence NA
PolyA Site: 1817(+) Signal: 1798-1802(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0214561
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 135210376- 135212192
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:4249
KEGG GENES KEGG GENES(4249)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000438751
Predicted CDS 1170..1478;  102[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.712

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000064640
H-Inv cluster ID Locus viewHIX0214561
Accession number AF055029.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000438751
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:4249
KEGG GENES KEGG GENES(4249)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 212098_at; 
HG-U133A 212098_at; 
HG-U133A_2 212098_at; 
HG-U133B NA
HG-U133_Plus_2 212098_at; 
HG-U95 34866_at; 
HG-U95A 34866_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2507055;  2507056;  2507057;  2507058;  2577490;  2577491; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
15 .. 15 A/G rs2290483 + 5'UTR
91 .. 91 G/A rs80233518 + 5'UTR
186 .. 186 C/A rs77355111 + 5'UTR
187 .. 187 T/C rs190095207 + 5'UTR
336 .. 336 G/A rs145994965 + 5'UTR
391 .. 391 A/G rs192867568 + 5'UTR
406 .. 406 G/A rs185809443 + 5'UTR
507 .. 507 C/T rs139933732 + 5'UTR
648 .. 648 T/C rs74398272 + 5'UTR
666 .. 666 T/C rs142217514 + 5'UTR
709 .. 709 T/C rs150808077 + 5'UTR
813 .. 813 G/- rs34570178 + 5'UTR
845 .. 845 A/G rs73960911 + 5'UTR
903 .. 903 C/T rs139231308 + 5'UTR
1043 .. 1043 T/G rs149984807 + 5'UTR
1053 .. 1053 G/T rs189466732 + 5'UTR
1096 .. 1096 T/G rs181049761 + 5'UTR
1135 .. 1135 A/G rs79775263 + 5'UTR
1169 .. 1169 A/T rs1041938 + 5'UTR
1174 .. 1174 G/C rs34497810 + CDS Nonsynonymous[Arg2Pro]
1292 .. 1292 A/G rs78024851 + CDS Synonymous[Thr41Thr]
1353 .. 1353 G/T rs185159508 + CDS Nonsynonymous[Ala62Ser]
1486 .. 1486 C/T rs7841 + 3'UTR
1571 .. 1571 C/A rs147686678 + 3'UTR
1598 .. 1598 C/T rs142454060 + 3'UTR
1651 .. 1651 C/G rs144758484 + 3'UTR
1707 .. 1707 G/A rs188693246 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIR 245 300 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer