H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
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HGNC gene name*
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H-Invitational ID:
HIT000057070
Accession number:
BX648423
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BX648423.1
CAGE tag ID
NA
EST ID
NA
Clone Number
DKFZp686D10250
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
Provider:
DKFZ/MIPS
;
Annotation project
H-Invitational FLcDNA
Length of cDNA
3800[bp] (No. of exon:2)[A:1057 T:983 G:952 C:808]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
human salivary gland
Develpmental stage
adult
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
Site: 3747(+)
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NMD predicted;
Notes
NA
GCAGGTACCCGGGAATTCGGCCACGGCCGACATGTTTTTTTTTTTTTTTT TTTCTTTTAGCAAAAATTTAACAGCTGGCAAAACTGTATTGTTAAGGATA CATGCAGAGGAGGTCAAACTACAAAAAGCACAGAATTATTACAAATGTCT ACTTATGCAGAGGGGAGGGTTGGGGTTGTGATTAGTAGGGGAACACGTAG GTGCTTTGGGGGTGCTAGTATTGTTTTCTCTCTTTAAGTTTGGGAGATTA CCCTGGATTATTGGGTAGAAACTGGGGTGGGTGAGCCCAATGTAATCACA AGCATTCTTAAATGGAGAAGAGAGAGGCAGAAGGGTCAGAAGCAGAAGCA GAGAGATTGCAATATATGAAAGACCTGGCCAGCCAGTGCTGGCTTTGAAG GTGGAGGAAGGGGCCGCAGGCCAAGGAATGCAGGCAGCCTCTAAAAGCTG GAAAGGGGAAGAAAGGAAAGAGATTCTCTACTAGAGCCCCCAGGAAGGAA TGCAGCCCTGCTGACACCTTCAGTTTAGCCCAGTGAGACCTGTTTTGGAC TTCTGACCTACGGAACTATAAGAAAAGAAATTTGTGTTGTTTTAAGCCCC TAAGTTTATGTTAGTTTATTAGAGCAGCAACAGGAAGCTGATCCACTGGG AAACCATCTGGGATATGCAGCTGCCCAAAATCCCTGCTCGTGGTTAGATT CAGCCTTACGAGGCTCCACAGCCCCTCTGCGAAAGACTCCATTCCCTCTT GGAGAAGCTCAGACTCTAGAGCCCTGGGCAAGGAATGGGCCTTCATGGCA TGGGGGCGATCAAGAAGGATGCCCCCCAGGACAGTGACTCTGCTGGACTT CTCTACAGAAAACAGTATATCCCTCAGTGGCGTGAGAAGATCCAATAGGG TCACCACACTCCACAACTGCAGGGGACACTGTTCACATTTTAGTCTATGC AGCCTCTGGTGGCCAAAGATTAAATGAGAACACCTTTGCTGTGTGACCTG AAGTTCATGGTCAGTAAATTGTAGCTATTGTTATGCACGACTTAGGGGGA AGCAGGTGTCACTGCAGAGCAGCAGTGGTTTTATAGAGATTTGCTTTATG ATTATTTGTTAAACTGAACATATATTCTATGTATTTTTCTGCATAATTAT TGTTTCACAATTTTTAAAAAGCATATACACACATGAATCTTCTCTAGCCC TGAACAGCACAGTGAATGGATAGGGCAGCAGATGAGCTCTGCCCCACGCC GGCCCTGTTTCAGAACAGCACTCCAGAGTGCCGCACTGCTTGCTGAACCA CAGCTGTTACTGCAGATTGAGGAGCCTCAGAGGGAACAGAAGATAAAGAT CATTATGGAATTTAGGATTGCAGGACATTCTTTGACATTTCATAACAGCC AGGGGAGATCAACTGTGGTCAGGGGACAGGGGCAGGAAGAAACCATGGCC AAGGCCTGTCTGGCAGGACTTGAAGGGGCAGAGGGACCCTTGCAAATGAC CCTGCCTGGAACCCACCCCCAGTTGGCCCCTGTATAGCACTGATCCAGCT GGGGCTTTTATCCCAGGATACCCTCTTCAGGGATGCCTGTATTTGTTGAT TATCTGCCATATGCCTGGTCACTGCAGAATACAAGGAAGAAAATAGCCTT CAGCAGAAGCTGAGACAGGAGCCTAGAGGATGGACAGTAAGGAGTCGAAG GCTCAGGATGAGGCTTTCCTGACTTTCTCCCCTAGGGGACTGATGTTCTC TACTGGTACAGACCTTGTTTTATTCATCCTTATGTCCCTAACCTGGAATG GGCCCAGGGTGACAGTTATAATAAGTGTTTGTCAAGTGAGCAAGTGTGTG GAGTGTGCATTGTAGAGAGTAAGGTCTCTACAGGATCCTGCTGGAGAGGC AGCCCACTGGGCTCACCACTTCTCCAGAGGAGGGACTGGTCCCTTGCCAG ACAACCCTGCCAGCTGGAGCAGGCTTCCTCAGGGGTGCCTGGAGCTGTTG ACCATGGCTGTTGCCCTCTGGCCCCTCTTGGGAAGAGCAACCTGTCAGGT GTTAAAGACGGTCTTCATTTCTCTTCTCCAAGTAAACATGACTAGTTTCC ATCTCACCATCTTCTGGCCCTCAGCAGACTGGTTATCCAGTCTGGAGAGG CAACAGTAGTATCCAGATGTGATCCGAACAGACAGAACGATGGATGCAGA CGGAAAATTCAGGTTTGTGTGCTTCGGCAGTCAGTATATGCAAGTCGTAA TGGGGACAGTGGCTGGCATGGCCTTTAGCACTGTGGGAAGGATCAGGGTG TCTGCCCATCATTTTTCTCTCTTTGATAGACACTGTTTACGTAGACACTG TTTTGGTGTAAAACCCTACGTTGTAGCTCTTGTCAACAGTGTTATGTTTC TCCTCAACTGTCCTGGAAACTCCCTGAGGTGGCTGGCTTGTAGGCACTCC ATACCTGTTAGCTAGTATTATTTATTTATTGTTTTATTATTTGAATGGAC AATCAATTCATGTCATTTAATGAACATGGGCTATGTGCCAGAAACCACCA GGTGCCAGAATACAACACTGAACTACAGTAGGCCTGTCCCTGGGCCCCAG AGCTCCCAGACACACTAGGAAGACTTGTTGATTTAATGATAAACCTTGAT TGAGCTCATGATTAACATCTTCACCACCAGACATCATTGAGTGCTCTCTG TGTGTTCAACTCAGAACATACCCTTCCTGCCCTCAGAGGCTGGAATGTGA GAGTCATTAAGGGAGACACCATTGTGGGAGTGAGAAAATCCTGGACTTGG AGGGAACTGACTAGGGATCACCTCCCAGCTCTGCCATGGACCCACTGTGT GACCATGGGCAAGTTACTTGACCTCTCTGAGCCTCAGTTATCTTATCAGT GAAACTGGGTTAATAATATATCTCTCAGTGGCACAGGAGGATCACATAGG GTCACCACACTCCACAACTCCAGGAGATGCTGTTAACATTTTAGTCTATG GATCCTCTGGTGGCCTAAGATTTAAATGAGAGCACTTTTGCTATGTGACC TGAAGTTAATGTCAATAAGTTATAGCTATTGTTATGTACAATGTAAGCAG GGGTCACTGCAGGCCAGAAGGCTGACACAATTTGGCCAGGCTTTGTTCTT CAAGGAAGGGCAGGGCTCTGAGAAGTGCAGACCGTGATGCAGGTGAAGGC CAGGAGGCAGGGACTCCCAGGGCAGGTCTGGAAGGAGCGAGGCTGGTGAC GGAAGTGGTCAGCAACCTCAAGGCATGAGTAAGGCGCTTGCCCTTCTCTC CAGGCACAGAGGAGTCACTGGAAGCTGGGCAAAGAGCTGTAGTCCCAGCT TCTCCGGAGGCTGAGGCGGGAGGATCACTTGAGCCTGTGAGGTCGAGACT GCACCGAGATTGCACTAAGCCGAGATTGCACCACTGCGCTCCAGCCTTGG TCAACAGGGTGAGATTTTGTCTCAAAAAATAAGTAAAAGTAATTATAGGT CATCATGGAATATTTTTAAACTATAGAAATATAAAAAATATATAATCACC TGTAATCCCACCATCCAAAGATAATCACCTTTAGTATTGTGATGTATTCC CTCCATCTGTATTCCACAAAAAAATTATATATTAATTAGATTTGAATTGT GTATAGTTTCACATCTCCCTTTTCCTCTGTAAAATTGTGCTTTATGAGAA GGAGGGATTGTTTTTAATGTAGAAGAAACTAGAAAACCTTTTTCTTAAAA AAAAAAAAAAAAAAAAAAAAAAGCAAAGCAAAAAAAAAAAAAAAAAAACA
Gene structure information
H-Inv cluster ID
HIX0200727
Genomic location
Chromosome
5
Location
5q31.1
Position
131804579- 131808705
Strand
+
Possible duplicated location(s)
NA
Gene structure
2 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000155642
Predicted CDS
1232..1537; 101[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.771
MSSAPRRPCFRTALQSAALLAEPQLLLQIEEPQREQKIKIIMEFRIAGHS LTFHNSQGRSTVVRGQGQEETMAKACLAGLEGAEGPLQMTLPGTHPQLAP V*
Gene function information
H-Inv ID
HIT000057070
H-Inv cluster ID
HIX0200727
Accession number
BX648423.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Splicing isoform
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000155642
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
mitochondria; cytosol;
Target P
signal peptide
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
1560128_x_at;
HG-U95
NA
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2828590; 2828591; 2875337; 2875338; 2875339; 2875340; 3220670;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
113 .. 113
G/A
rs187902668
+
5'UTR
256 .. 256
G/T
rs142163407
+
5'UTR
351 ^ 352
-/A
rs200169146
+
5'UTR
410 .. 410
G/A
rs113814099
+
5'UTR
441 .. 441
C/T
rs191411602
+
5'UTR
505 .. 505
G/C
rs182450752
+
5'UTR
621 .. 621
A/G
rs146756355
+
5'UTR
731 .. 731
G/A
rs35454153
+
5'UTR
808 .. 808
G/A
rs187905674
+
5'UTR
821 ^ 822
-/C
rs200303372
+
5'UTR
829 .. 829
G/A
rs140373184
+
5'UTR
882 .. 882
G/A
rs2522062
+
5'UTR
1027 .. 1027
A/G
rs145646060
+
5'UTR
1034 .. 1034
T/C
rs192963098
+
5'UTR
1046 .. 1046
G/A
rs184861569
+
5'UTR
1057 .. 1057
T/G
rs2522063
+
5'UTR
1066 .. 1066
A/C
rs146538626
+
5'UTR
1201 .. 1201
T/C
rs2706379
+
5'UTR
1413 .. 1413
C/G
rs140923340
+
CDS
Nonsynonymous[Thr61Ser]
1516 ^ 1517
-/C
rs34250424
+
CDS
1582 .. 1582
G/C
rs190101377
+
3'UTR
1624 .. 1624
G/A
rs192924691
+
3'UTR
1635 .. 1635
G/A
rs35194480
+
3'UTR
1736 .. 1736
G/A
rs2706380
+
3'UTR
1819 .. 1819
T/C
rs35053097
+
3'UTR
1864 .. 1864
A/G
rs117221305
+
3'UTR
1946 .. 1946
G/A
rs138796469
+
3'UTR
1954 .. 1954
A/G
rs2522064
+
3'UTR
2029 .. 2029
T/A
rs184531704
+
3'UTR
2168 .. 2168
T/C
rs149416641
+
3'UTR
2175 .. 2175
C/T
rs189511143
+
3'UTR
2176 .. 2176
G/A
rs147076944
+
3'UTR
2189 .. 2189
G/A
rs115098950
+
3'UTR
2234 .. 2234
G/C
rs3846729
+
3'UTR
2246 .. 2246
C/T
rs3846730
+
3'UTR
2257 .. 2257
C/T
rs138551437
+
3'UTR
2297 .. 2297
G/C
rs180807957
+
3'UTR
2482 .. 2482
T/G
rs3912059
+
3'UTR
2513 .. 2513
T/A
rs111640931
+
3'UTR
2563 .. 2563
C/T
rs116503599
+
3'UTR
2638 .. 2638
G/T
rs80353239
+
3'UTR
2644 .. 2644
C/G
rs185218544
+
3'UTR
2698 .. 2698
C/G
rs113581656
+
3'UTR
2732 .. 2732
C/T
rs189493736
+
3'UTR
2873 .. 2873
C/T
rs181184996
+
3'UTR
3006 .. 3006
T/A
rs4345311
+
3'UTR
3090 .. 3090
A/G
rs2057655
+
3'UTR
3105 .. 3105
C/T
rs186409551
+
3'UTR
3184 .. 3184
G/A
rs191631925
+
3'UTR
3365 .. 3365
G/A
rs111718170
+
3'UTR
3422 .. 3422
G/A
rs186400246
+
3'UTR
3448 .. 3448
T/G
rs144061529
+
3'UTR
3625 .. 3625
T/G
rs191159729
+
3'UTR
3710 .. 3710
G/A
rs2548992
+
3'UTR
3747 .. 3747
A/-
rs11296226
+
3'UTR
3747 ^ 3748
-/A
rs34419373
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
L1ME3B
63
149
+
MLT1D
234
645
+
MER91C
907
949
+
L1ME3B
1075
1173
+
L2c
1713
1839
+
L3
2017
2099
-
L2b
2514
2624
-
MIRc
2760
2952
+
MER91C
2958
3000
+
AluJb
3337
3488
+
L1ME4a
3500
3636
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;