H-InvDB x AHG DB
Transcript view
H-InvDB_8.3 released on March 26, 2013.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000057070 Accession number: BX648423 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number BX648423.1
CAGE tag ID NA
EST ID NA
Clone Number DKFZp686D10250
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Provider:DKFZ/MIPS
Annotation project H-Invitational FLcDNA
Length of cDNA 3800[bp] (No. of exon:2)[A:1057 T:983 G:952 C:808]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type human salivary gland
Develpmental stage adult
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 3747(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0200727
Genomic location  G-integra Help Chromosome 5
Location NA
Position 131804579- 131808705
Strand +
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NM_001013717NM_001207001NM_001207002NM_001207003
Ensembl ENST00000337752ENST00000378947ENST00000378953ENST00000407797ENST00000443093ENST00000461203ENST00000464024
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000155642
Predicted CDS 1232..1537;  101[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.771

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000057070
H-Inv cluster ID Locus viewHIX0200727
Accession number BX648423.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000155642
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_001013717NM_001207001NM_001207002NM_001207003
Ensembl ENST00000337752ENST00000378947ENST00000378953ENST00000407797ENST00000443093ENST00000461203ENST00000464024
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT mitochondria;  cytosol; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1560128_x_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2828590;  2828591;  2875337;  2875338;  2875339;  2875340;  3220670; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  601888608850611091612554612571
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name NA
Disease NA
Substance NA
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
410 .. 410 G/A rs113814099 + 5'UTR
731 .. 731 G/A rs35454153 + 5'UTR
882 .. 882 G/A rs2522062 + 5'UTR
1057 .. 1057 T/G rs2522063 + 5'UTR
1201 .. 1201 T/C rs2706379 + 5'UTR
1520 ^ 1521 -/C rs34250424 + CDS
1635 .. 1635 G/A rs35194480 + 3'UTR
1736 .. 1736 G/A rs2706380 + 3'UTR
1819 .. 1819 T/C rs35053097 + 3'UTR
1864 .. 1864 A/G rs117221305 + 3'UTR
1954 .. 1954 A/G rs2522064 + 3'UTR
2189 .. 2189 G/A rs115098950 + 3'UTR
2234 .. 2234 G/C rs3846729 + 3'UTR
2246 .. 2246 C/T rs3846730 + 3'UTR
2482 .. 2482 T/G rs3912059 + 3'UTR
2513 .. 2513 T/A rs111640931 + 3'UTR
2563 .. 2563 C/T rs116503599 + 3'UTR
2638 .. 2638 G/T rs80353239 + 3'UTR
2698 .. 2698 C/G rs113581656 + 3'UTR
3006 .. 3006 T/A rs4345311 + 3'UTR
3090 .. 3090 A/G rs2057655 + 3'UTR
3184 .. 3184 G/A rs115436865 + 3'UTR
3365 .. 3365 G/A rs111718170 + 3'UTR
3710 .. 3710 G/A rs2548992 + 3'UTR
3744 .. 3744 C/T rs75749052 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L1ME3B 63 149 +
MLT1D 234 645 +
MER91C 907 949 +
L1ME3B 1075 1173 +
L2c 1713 1839 +
L3 2017 2099 -
L2b 2514 2624 -
MIRc 2760 2952 +
MER91C 2958 3000 +
AluJb 3337 3488 +
L1ME4a 3500 3636 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer