H-InvDB_9.0 released on May 27, 2015.
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Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
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H-Invitational ID:
HIT000056791
Accession number:
BX648144
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Similar to Talin-2;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
BX648144.1
CAGE tag ID
NA
EST ID
NA
Clone Number
DKFZp686I0976
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
Provider:
DKFZ/MIPS
;
Annotation project
H-Invitational FLcDNA
Length of cDNA
2125[bp] (No. of exon:9)[A:546 T:483 G:526 C:570]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
NA
Tissue type
human endometrium carcinoma cell line
Develpmental stage
adult
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
GGGCAATTAAGTGCTTTCAGTGTGTACCACAGACACCCGATCCAGCTCTC TTTAATCGAATTTGACTTGGCTGCCCTGGATGGGGATTTCTCTGAAGACA ACCGCAATAAGTGTCGCATCGCCACCGCACCCTTGATTGAAGCTGTGGAG AACCCGACAGCGTTCGCCTCAAACCCTGAGTTTGTCAGCATTCCTGCCCA GATCAGCTCCGAGGGTTCCCAGGCACAGGAACCAATCCTGGTCTCAGCCA AGACCATGCTGGAGAGTTCATCGTACCTCATTCGCACTGCACGCTCTCTG GCCATCAACCCCAAAGACCCACCCACCTGGTCTGTACTGGCTGGACATTC CCATACAGTGTCCGACTCCATCAAGAGTCTCATCACTTCTATCAGGGACA AGGCCCCTGGACAGAGGGAGTGTGATTACTCCATCGATGGCATCAACCGG TGCATCCGGGACATCGAGCAGGCCTCGCTGGCCGCCGTCAGCCAGAGCCT GGCCACGAGGGACGACATCTCTGTGGAGGCCCTGCAGGAGCAGCTGACTT CGGTGGTCCAGGAAATCGGACACCTTATCGATCCCATCGCCACAGCGGCT CGGGGAGAAGCAGCTCAGCTGGGACATAAGGTGACACAACTGGCAAGCTA TTTTGAGCCCTTGATCTTAGCCGCAGTTGGTGTGGCCTCCAAGATTCTTG ATCATCAGCAGCAGATGACGGTGCTGGACCAGACCAAGACTCTCGCAGAG TCTGCCTTGCAGATGTTGTATGCAGCCAAAGAAGGTGGCGGAAACCCCAA GGCACAACACACCCATGACGCCATCACAGAGGCCGCCCAGTTGATGAAGG AAGCCGTGGATGACATCATGGTGACGCTGAACGAAGCTGCCAGTGAAGTG GGGCTGGTTGGGGGCATGGTGGACGCCATTGCAGAAGCCATGAGCAAGCT GGATGAAGGCACTCCTCCAGAACCAAAGGGAACATTTGTCGACTATCAGA CGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGACAGCTCAGGAAATG ATGACTAAGTCGGTTACTAACCCGGAGGAGTTGGGAGGACTGGCTTCACA AATGACCAGTGACTATGGGCACCTGGCTTTCCAGGGCCAGATGGCAGCAG CCACGGCGGAACCAGAGGAGGTCTGCCACCTTAAGACCCCTATTTTAAGA TGCACACACACACTGGTGCCCACTCCTGGGTATTTCTTCATAGCTTAGCT CCACTCTGGAAGACCCCAGCCCAGTAACCAGAGCCCAGTTTATTTCCCCA CCACTGCACAGCACAGGTCCAGACCAGGTAGCCCCAGCTGTACTCAAGTC TCACTGCCCCTTATGGGGCAGACTGGCTAAGAACCGGGGCATGGGCTTTC AGACAGAAGGACTTTGTATACAGTGTTCTACCAGGTCCCCTGTCCCTAGC CCTGTCACCTGTCTCTTTTAGCATGCCCAAGCTTGGGACTGCCATCATAT CACTTCCTACTCCAGTTAGCACATCCCCCGCAATTATTTTTGTTTTCCAT AGGTTCACAGAAGTGTTGAAAGATTCAAGTATGAAAATTAGCTATCCCTC TCCCTCGAAAGAGCTACTTTCATGAAACAAAGTCTTGCCTGAATATTCTG GGTGGCTAAGAATTAGCCCAGACATACCTCCTGTGGACTCCTTTTATTAC TTCCCTGCCTTTCCTAGACCAGCTTTCCTTAGTGGCCAGTGTAGACTTGG CTTTAGAATGCCTGTACCCGTAAGAGTCTAACGGTAGCCAAAGTTGGGCC CCAAAGGCCACTTTCTAAGAGCTGCCATCTCTCATACTTCTAATGGGGTG GTCCATTGGGAAGGACACAGGTCATGTGTGGCTCCAAGGAGCTTTGTAGC ATCTATATCAGTGTGAACACATAGAAGGAGTCCAGGGCTTGGGGGAACCA CATGGCTTCTTAGATAAAGGAAGCCCAATTTAAAATGAAGATTAATGGAG TGGATTACAGGGACACTTAAAAGATAAAAGTAATTATATTCTGTGAAATT CAGCAAGCTGTTTATTGAGCGCAAACCATGTTCGAGACGTTCCTAAATGA ACTGAGTTGTCAAGGCAAAAAAAAA
Gene structure information
H-Inv cluster ID
HIX0012315
Genomic location
Chromosome
15
Location
15q22.2
Position
63050789- 63077040
Strand
+
Possible duplicated location(s)
NA
Gene structure
9 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:83660
;
KEGG GENES
KEGG GENES(83660)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000217474
Predicted CDS
256..1248; 330[aa]; Orientation:+1;
Codon Adaptation Index (CAI).
0.783
MLESSSYLIRTARSLAINPKDPPTWSVLAGHSHTVSDSIKSLITSIRDKA PGQRECDYSIDGINRCIRDIEQASLAAVSQSLATRDDISVEALQEQLTSV VQEIGHLIDPIATAARGEAAQLGHKVTQLASYFEPLILAAVGVASKILDH QQQMTVLDQTKTLAESALQMLYAAKEGGGNPKAQHTHDAITEAAQLMKEA VDDIMVTLNEAASEVGLVGGMVDAIAEAMSKLDEGTPPEPKGTFVDYQTT VVKYSKAIAVTAQEMMTKSVTNPEELGGLASQMTSDYGHLAFQGQMAAAT AEPEEVCHLKTPILRCTHTLVPTPGYFFIA*
Motif information
a.a.
length
InterPro
Name
306
IPR015711
Talin-2 [Family]
119
IPR006077
Vinculin/alpha-catenin [Family]
75
IPR006077
Vinculin/alpha-catenin [Family]
69
IPR015009
Vinculin-binding site-containing domain [Domain]
Gene function information
H-Inv ID
HIT000056791
H-Inv cluster ID
HIX0012315
Accession number
BX648144.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
NO;
Splicing isoform
Coding potential
Protein coding;
Definition
Similar to Talin-2;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9Y4G6
) [Identity/coverage = 98.645%/14.52%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
9205841
;
11527381
;
12168954
;
12422219
;
16572171
;
16964243
;
18669648
;
21269460
;
21406692
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
TLN2
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000217474
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:83660
;
KEGG GENES
KEGG GENES(83660)
;
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Auto-annotated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
actin filament binding (
GO:0051015
);
Biological process
cell adhesion (
GO:0007155
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
mitochondria; cytosol; nuclear; peroxisome;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
89
212
2b0hA1
5e-06
16.9
124/100
a.24.9.2
232
305
2b0hA1
4e-14
63.5
74/100
a.24.9.2
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
NA
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
NA
HG-U133_Plus_2
NA
HG-U95
81893_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
NA
HG-U95D
81893_at;
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
3597205; 3597208; 3597209; 3597211; 3597212; 3597215; 3597216; 3597218; 3597221; 3597222;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
5 .. 5
A/-
rs113839254
+
5'UTR
12 .. 12
T/C
rs12324409
+
5'UTR
13 .. 13
G/A
rs7181066
+
5'UTR
39 .. 39
G/A
rs117787653
+
5'UTR
98 .. 98
A/C
rs139323765
+
5'UTR
120 .. 120
C/T
rs146729597
+
5'UTR
126 .. 126
C/T
rs148891969
+
5'UTR
127 .. 127
G/A
rs143603462
+
5'UTR
162 .. 162
G/A
rs148071691
+
5'UTR
206 .. 206
G/A
rs141621869
+
5'UTR
207 .. 207
C/A
rs74381092
+
5'UTR
254 .. 254
C/T
rs150096125
+
5'UTR
272 .. 272
C/T
rs190697613
+
CDS
Nonsynonymous[Ser6Leu]
273 .. 273
G/A
rs138708550
+
CDS
Synonymous[Ser6Ser]
289 .. 289
G/A
rs142760429
+
CDS
Nonsynonymous[Ala12Thr]
292 .. 292
C/T
rs200886764
+
CDS
Nonsynonymous[Arg13Cys]
303 .. 303
C/T
rs147498967
+
CDS
Synonymous[Ala16Ala]
435 .. 435
C/T
rs140087396
+
CDS
Synonymous[Ile60Ile]
436 .. 436
G/A
rs149627024
+
CDS
Nonsynonymous[Asp61Asn]
438 .. 438
T/C
rs144384637
+
CDS
Synonymous[Asp61Asp]
457 .. 457
C/T
rs202059168
+
CDS
Nonsynonymous[Arg68Trp]
465 .. 465
C/T
rs148806117
+
CDS
Synonymous[Ile70Ile]
506 .. 506
C/T
rs147117916
+
CDS
Nonsynonymous[Thr84Met]
551 .. 551
C/T
rs142261304
+
CDS
Nonsynonymous[Ser99Leu]
555 .. 555
G/C
rs35946975
+
CDS
Synonymous[Val100Val]
567 .. 567
C/T
rs139582651
+
CDS
Synonymous[Ile104Ile]
579 .. 579
C/T
rs201384963
+
CDS
Synonymous[Ile108Ile]
588 .. 588
C/T
rs139364010
+
CDS
Synonymous[Ile111Ile]
601 .. 601
C/T
rs146711240
+
CDS
Nonsynonymous[Arg116Trp]
602 .. 602
G/A
rs200045232
+
CDS
Nonsynonymous[Arg116Gln]
603 .. 603
G/T
rs140291112
+
CDS
Synonymous[Arg116Arg]
631 .. 631
G/A
rs201711971
+
CDS
Nonsynonymous[Val126Met]
672 .. 672
C/T
rs200925755
+
CDS
Synonymous[Ala139Ala]
686 .. 686
C/T
rs149940780
+
CDS
Nonsynonymous[Ala144Val]
744 .. 744
C/G
rs200255870
+
CDS
Synonymous[Leu163Leu]
756 .. 756
C/T
rs150770826
+
CDS
Synonymous[Ala167Ala]
763 .. 763
A/T
rs200011295
+
CDS
Nonsynonymous[Met170Leu]
834 .. 834
C/T
rs145072613
+
CDS
Synonymous[Ala193Ala]
835 .. 835
G/A
rs141816570
+
CDS
Nonsynonymous[Ala194Thr]
849 .. 849
G/A
rs145732508
+
CDS
Synonymous[Lys198Lys]
864 .. 864
C/T
rs113320595
+
CDS
Synonymous[Asp203Asp]
876 .. 876
G/A
rs141182921
+
CDS
Synonymous[Thr207Thr]
879 .. 879
G/A
rs146956888
+
CDS
Synonymous[Leu208Leu]
924 .. 924
C/T
rs200962160
+
CDS
Synonymous[Asp223Asp]
925 .. 925
G/A
rs138052939
+
CDS
Nonsynonymous[Ala224Thr]
934 .. 934
G/A
rs200375758
+
CDS
Nonsynonymous[Glu227Lys]
974 ^ 975
-/A
rs36019073
+
CDS
981 .. 981
A/T
rs141936748
+
CDS
Synonymous[Gly242Gly]
985 .. 985
T/A
rs150674208
+
CDS
Nonsynonymous[Phe244Ile]
988 .. 988
G/T
rs138929602
+
CDS
Nonsynonymous[Val245Phe]
995 .. 995
A/G
rs149434344
+
CDS
Nonsynonymous[Tyr247Cys]
1033 .. 1033
G/A
rs141920011
+
CDS
Nonsynonymous[Val260Met]
1040 .. 1040
C/T
rs146289948
+
CDS
Nonsynonymous[Ala262Val]
1063 .. 1063
G/A
rs7182971
+
CDS
Nonsynonymous[Val270Ile]
1068 .. 1068
T/A
rs144235392
+
CDS
Synonymous[Thr271Thr]
1107 .. 1107
C/A
rs145593887
+
CDS
Synonymous[Thr284Thr]
1149 .. 1149
A/G
rs148751789
+
CDS
Synonymous[Ala298Ala]
1201 .. 1201
T/C
rs148879771
+
CDS
Nonsynonymous[Cys316Arg]
1431 .. 1431
C/T
rs1498128
-
3'UTR
1447 .. 1447
T/A
rs142612537
+
3'UTR
1500 .. 1500
T/C
rs181181580
+
3'UTR
1532 .. 1532
A/T
rs186892762
+
3'UTR
1538 .. 1538
T/G
rs151076036
+
3'UTR
1649 .. 1649
T/C
rs141286996
+
3'UTR
1746 .. 1746
C/T
rs145019917
+
3'UTR
1965 .. 1965
T/G
rs2133090
-
3'UTR
2095 .. 2095
A/C
rs115579885
+
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
No data available
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene;
Repeat Mask Viewer
;