H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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H-Invitational ID: HIT000052664 Accession number: BC042154 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Selenoprotein N; SelN; Precursor;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Gene function information

H-Inv ID		HIT000052664
H-Inv cluster ID		HIX0000278
Accession number		BC042154.2
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Similar to Selenoprotein N; SelN; Precursor;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q9NZV5)  [Identity/coverage = 98.773%/27.63%] to Homo sapiens (Human). protein.
Experimental evidence		Protein evidence
PubMed ID		10608886;  11528383;  12192640;  12700173;  15122708;  15489334;  16710414;  19067361;  ALL;
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	SEPN1
	HGNC aliases	"rigid spine muscular dystrophy 1"
	HGNC name	selenoprotein N, 1
	DDBJ	SEPN1
	UniProt	SEPN1
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000012927
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_019557;  NM_020451;  NM_206926;  NM_001099625;  NM_001099626;  NM_001099627;
	Ensembl	ENST00000354177;  ENST00000361547;  ENST00000374300;  ENST00000374301;  ENST00000374303;  ENST00000374307;  ENST00000374315;  ENST00000388882;  ENST00000424294;  ENST00000464008;  ENST00000466284;  ENST00000469815;  ENST00000472643;  ENST00000474295;  ENST00000478284;  ENST00000488327;  ENST00000494293;  ENST00000494537;  ENST00000497956;  ENST00000524618;  ENST00000525713;  ENST00000526158;  ENST00000526894;  ENST00000527604;  ENST00000528624;  ENST00000529116;  ENST00000530599;  ENST00000531361;  ENST00000533762;
	Entrez Gene	Entrez Gene ID:57190;
	KEGG GENES	KEGG GENES(57190);
	GeneCard	SEPN1;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA