H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000052647 Accession number: BC042107 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number BC042107.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:50722 IMAGE:5170879
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Provider:MGC/NCI
Annotation project H-Invitational FLcDNA
Length of cDNA 3630[bp] (No. of exon:0)[A:751 T:518 G:1156 C:1205]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type Brain, adult medulla
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA Site: 3544(+) Signal: 3525-3529(+)
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes UM gene supported by high quality evidences.

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0027949
Genomic location  G-integra Help Chromosome UM
Location NA
Position NA
Strand NA
Possible duplicated location(s) NA
Gene structure  exon(s)
Database links RefSeq NM_203348
Ensembl NA
Entrez Gene Entrez Gene ID:399693
KEGG GENES KEGG GENES(399693)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000087058
Predicted CDS 241..3102;  953[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.814
Database links RefSeq NP_976223
UniProt Q8IVT4
CCDS NA

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000052647
H-Inv cluster ID Locus viewHIX0027949
Accession number BC042107.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ MGC50722
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000087058
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_203348
Ensembl NA
Entrez Gene Entrez Gene ID:399693
KEGG GENES KEGG GENES(399693)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes UM gene supported by high quality evidences.
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT nuclear;  cytosol; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1554681_a_at;  1554683_a_at; 
HG-U95 79752_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D 79752_at; 
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 NA
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P912048; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator