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H-Invitational ID: HIT000051469 Accession number: BC035680 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: T-cell receptor alpha chain C region;
 
 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
9 .. 9 G/A rs191961603 + 5'UTR
79 .. 79 C/G rs144208720 + 5'UTR
130 .. 130 T/C rs35505570 + 5'UTR
135 .. 135 A/C rs61974828 + 5'UTR
147 .. 147 A/G rs926027 + 5'UTR
245 .. 245 G/A rs182837293 + CDS Synonymous[Val23Val]
269 .. 269 C/G rs113553257 + CDS Nonsynonymous[Asn31Lys]
532 .. 532 G/T rs148590887 + CDS Nonsynonymous[Gly119Val]
590 .. 590 C/G rs56298757 + CDS Nonsynonymous[Asn138Lys]
777 .. 777 A/G rs184088135 + CDS Nonsynonymous[Asn201Asp]
791 .. 791 T/A rs188818338 + CDS Nonsynonymous[Phe205Leu]
793 .. 793 C/T rs138496993 + CDS Nonsynonymous[Ala206Val]
799 .. 799 C/G rs111376523 + CDS Nonsynonymous[Ala208Gly]
804 .. 804 G/A rs61740301 + CDS Nonsynonymous[Ala210Thr]
812 .. 812 C/T rs181336928 + CDS Synonymous[Asn212Asn]
819 .. 819 A/G rs141035173 + CDS Nonsynonymous[Ile215Val]
829 .. 829 A/C rs61741618 + CDS Nonsynonymous[Glu218Ala]
830 .. 830 A/G rs1263644 + CDS Synonymous[Glu218Glu]
902 .. 902 G/T rs78619778 + CDS Synonymous[Thr242Thr]
993 .. 993 T/C rs201133432 + CDS Nonsynonymous[Trp273Arg]
1034 .. 1034 T/C rs202179565 + 3'UTR
1072 .. 1072 C/T rs140338675 + 3'UTR
1087 .. 1087 A/G rs45512705 + 3'UTR
1094 .. 1094 T/C rs15795 + 3'UTR
1127 .. 1127 T/C rs112310271 + 3'UTR
1146 ^ 1147 -/C rs11462449 + 3'UTR
1147 .. 1147 A/C rs201208032 + 3'UTR
1147 ^ 1148 -/A/C rs35249538 + 3'UTR
1148 .. 1148 C/A rs201672662 - 3'UTR
1163 .. 1163 C/A rs17461 + 3'UTR
1279 ^ 1280 -/C rs33917135 + 3'UTR
1280 .. 1280 T/C rs200455004 + 3'UTR
1283 .. 1283 C/G rs3699 + 3'UTR
1296 .. 1296 A/T rs144196489 + 3'UTR
1300 .. 1300 C/T rs151169555 + 3'UTR
1377 .. 1377 T/C rs3700 + 3'UTR
1378 .. 1378 G/A rs79317848 + 3'UTR
1379 .. 1379 C/G rs3701 + 3'UTR
1405 .. 1405 T/C rs139070275 + 3'UTR
1428 .. 1428 T/A/C/G rs3702 + 3'UTR
1453 .. 1453 G/A rs200432327 + 3'UTR
1455 .. 1455 G/C rs116430416 + 3'UTR
1460 .. 1460 G/A rs149828865 + 3'UTR
1476 .. 1476 C/T rs201193295 + 3'UTR
1497 .. 1497 A/G rs9125 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Mini-G

 Repeat  Repeat mask viewer
No data available
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer