H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000046076 Accession number: AK126203 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Similar to RELT-like protein 2;
 
 

Transcript original information
Accession number AK126203.1
CAGE tag ID NA
EST ID NA
Clone Number THYMU3003565
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (FCHSD1) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (FCHSD1);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 3181[bp] (No. of exon:2)[A:656 T:832 G:827 C:866]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type thymus
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0200720
Genomic location  G-integra Help Chromosome 5
Location NA
Position 141018870- 141022188
Strand -
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NM_033449; 
Ensembl ENST00000435817;  ENST00000518160;  ENST00000518499;  ENST00000519800;  ENST00000520747;  ENST00000522126;  ENST00000522386;  ENST00000522763;  ENST00000522783;  ENST00000523856; 
Entrez Gene Entrez Gene ID:89848; 
KEGG GENES KEGG GENES(89848); 
GeneCard GeneCardFCHSD1;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000034232
Predicted CDS 398..664;  88[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.761

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000046076
H-Inv cluster ID Locus viewHIX0200720
Accession number AK126203.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Similar to RELT-like protein 2;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q8NC24)  [Identity/coverage = 100.0%/63.04%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 12975309;  15489334;  16303743;  16389068;  ALL; 
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol FCHSD1
HGNC aliases NA
HGNC name FCH and double SH3 domains 1
DDBJ NA
UniProt RELL2
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000034232
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_033449; 
Ensembl ENST00000435817;  ENST00000518160;  ENST00000518499;  ENST00000519800;  ENST00000520747;  ENST00000522126;  ENST00000522386;  ENST00000522763;  ENST00000522783;  ENST00000523856; 
Entrez Gene Entrez Gene ID:89848; 
KEGG GENES KEGG GENES(89848); 
GeneCard GeneCardFCHSD1;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT extracellular;  nuclear;  cytosol; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2832874;  2878783;  2878785; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  601888;  608850;  611091;  612554;  612571; 
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(89848)
Disease Entrez Gene ID:(89848)
Substance Entrez Gene ID:(89848)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
67 .. 67 T/- rs35094060 - 5'UTR
74 .. 74 C/T rs77048297 - 5'UTR
74 .. 75 CT/- rs111256073 - 5'UTR
103 .. 103 T/A rs75212457 - 5'UTR
254 .. 254 T/C rs251180 - 5'UTR
473 .. 473 T/A rs6580193 - CDS Nonsynonymous[Phe26Ile]
883 .. 883 C/A rs75142511 - 3'UTR
895 .. 895 A/C rs116772138 - 3'UTR
955 .. 955 C/T rs32957 - 3'UTR
1041 .. 1041 C/G rs114773384 - 3'UTR
1197 ^ 1198 -/ACT rs1160948 - 3'UTR
1198 ^ 1199 -/CTA rs35590706 - 3'UTR
1199 ^ 1200 -/TAC rs4042097 - 3'UTR
1202 ^ 1203 -/TAC rs3833652 + 3'UTR
1286 .. 1286 A/G rs187515 - 3'UTR
1290 .. 1290 C/T rs1048452 + 3'UTR
1309 .. 1309 A/C rs1048453 + 3'UTR
1327 .. 1327 A/C rs1048455 + 3'UTR
1332 .. 1332 A/C rs1048456 + 3'UTR
1494 .. 1494 A/G rs116046686 - 3'UTR
1629 .. 1629 A/G rs79685025 - 3'UTR
1758 .. 1758 C/T rs78047479 - 3'UTR
1766 .. 1766 C/T rs112543254 - 3'UTR
1799 .. 1799 G/A rs117127684 - 3'UTR
1951 .. 1951 G/T rs41098 - 3'UTR
2170 .. 2170 C/G rs32956 - 3'UTR
2221 .. 2221 G/C rs11742646 - 3'UTR
2308 ^ 2309 -/T rs35340436 - 3'UTR
2482 .. 2482 C/G rs17855844 - 3'UTR
2498 .. 2498 G/A rs79900076 - 3'UTR
2727 .. 2727 C/T/G/A rs73285814 - 3'UTR
2738 .. 2738 G/A rs32955 - 3'UTR
2777 .. 2777 G/A rs78820103 - 3'UTR
2801 .. 2801 C/T rs56017834 - 3'UTR
2941 .. 2941 G/T rs14251 - 3'UTR
2956 .. 2956 A/G rs17855845 - 3'UTR
2992 .. 2992 C/T rs113111824 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L1PA17 96 464 -
L2a 761 831 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;