H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000037119 Accession number: BC015422 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Similar to Uncharacterized protein;

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number BC015422.1 CAGE tag ID NA EST ID NA Clone Number MGC:21990 IMAGE:4397794 Experimental resources   NBRC ; HGPD ; Antibody (ANKRD9) ; Catalog (ANKRD9); Sequence data provider Provider:MGC/NCI;  Annotation project H-Invitational FLcDNA Length of cDNA 1466[bp] (No. of exon:2)[A:222 T:246 G:488 C:510] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type Duodenum, adenocarcinoma Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA Site: 1441(+) Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature Truncation;  Notes NA

GGAGAATTGGAGAAGCTTGTGCCCTGCTGGAAAGTGGGATGGCAGTACCC GCTTCATCTAGTAGTCGGGGAGATCAAGAGAGGTATGGGACCTGAAGAGG ATGGCAGACTGTGCAGTGCGGTGCACACCGGTCTCCAGGTTGTTTTCACC CTCCTGTCTCCTCCCAGGAGCTAACGTGTAAGCAAACATGTTTGGATAGA GGGCTGGTGCCACGCCCCAGGCTCACCCCGCCCGCACAGCCGTCGTCCAC CCCTCCCCTTTCTTACAGATAAAGCTGAGGCTCGGCCAGGGACTGTGATA TACCCACATCCCCGGAACTAGGTGATCGCGGTGCAGGAACCAGGTGTGCC TTCGCGGGATCCATGCCTTGAGGCCCAGGAACGCCCCGCCGCCAGCATGC CGTGGGACGCGCGGCGGCCTGGGGGTGGCGCGGACGGCGGGCCCGAGGCC TCGGGCGCGGCGCGCTCGCGAGCGCAGAAGCAGTGCCGCAAGTCGTCGTT CGCCTTCTACCAGGCGGTGCGCGACCTGCTACCCGTGTGGCTGCTGGAGG ATATGCGCGCCAGCGAGGCCTTCCACTGGGACGAGCGCGGGCGCGCCGCC GCCTACTCGCCCTCTGAGGCGCTGCTCTACGCGCTCGTGCACGACCACCA AGCGTACGCGCATTACCTGCTGGCCACGTTCCCGCGGCGCGCGCTCGCAC CGCCCAGTGCCGGCTTCCGCTGCTGCGCGGCTCCCGGGCCGCACGTGGCG CTGGCAGTGCGCTACAACCGCGTGGGCATTCTGCGCCGCATCCTGCGCAC CTTGCGCGACTTCCCGGCCGAGGAGCGGGCGCGCGTGCTGGACCGGCGTG GCTGCAGCCGCGTGGAGGGCGGTGGCACGTCGCTGCACGTGGCCTGTGAG CTGGCGCGCCCCGAGTGCCTCTTCCTGCTGCTGGGCCACGGCGCCTCGCC CGGTCTGCGGGACGGCGGCGGCCTCACGCCTCTCGAGCTGCTGCTGCGCC AGCTGGGCCGCGACGCCGGGGCCACTCCCTCCGCCGCCGGAGCCCCCGCC TCAGCTCCCGGGGAGCCGCGCCAGCGCCGCCTGCTGCTGCTGGACCTCCT GGCGCTGTACACCCCCGTGGGTGCCGCCGGCTCGGCCCGCCAGGAGCTGC TGGGCGACCGGCCGCGCTGGCAGCGGCTGCTGGGTGAGGACAAGTTCCAG TGGCTGGCGGGCCTGGCGCCGCCCTCGCTCTTCGCGCGCGCCATGCAGGT GCTGGTCACCGCCATCTCTCCAGGCCGCTTCCCCGAGGCCCTGGACGAGC TGCCGCTGCCCCCATTCCTGCAGCCGTTGGACCTCACTGGCAAAGGCTAG GCCCGGAGCACCCTAGGCGCTGGATTTTGGGACAAAACTATTTTTCAGAG CGTTGTACCGGCACTTTATATATATTGATCTCTGTACGGCAAAAAAAAAA AAAAAAAAAAAAAAAA

Gene structure information

H-Inv cluster ID		HIX0011990
Genomic location	Chromosome	14
	Location	14q32.31
	Position	102973182- 102975154
	Strand	-
Possible duplicated location(s)		NA
Gene structure		2 exon(s)
Database links	RefSeq	NM_152326;
	Ensembl	ENST00000286918;
	Entrez Gene	Entrez Gene ID:122416;
	KEGG GENES	KEGG GENES(122416);
	GeneCard	ANKRD9;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000087627 Predicted CDS 397..1350;  317[aa];  Orientation:+1;  Codon Adaptation Index (CAI). 0.772 Database links RefSeq NP_689539;  UniProt Q96BM1;  CCDS CCDS9973;

MPWDARRPGGGADGGPEASGAARSRAQKQCRKSSFAFYQAVRDLLPVWLL EDMRASEAFHWDERGRAAAYSPSEALLYALVHDHQAYAHYLLATFPRRAL APPSAGFRCCAAPGPHVALAVRYNRVGILRRILRTLRDFPAEERARVLDR RGCSRVEGGGTSLHVACELARPECLFLLLGHGASPGLRDGGGLTPLELLL RQLGRDAGATPSAAGAPASAPGEPRQRRLLLLDLLALYTPVGAAGSARQE LLGDRPRWQRLLGEDKFQWLAGLAPPSLFARAMQVLVTAISPGRFPEALD ELPLPPFLQPLDLTGKG*

Motif information

	a.a. length	InterPro	Name
	81	IPR020683	Ankyrin repeat-containing domain [Domain]
	41	IPR020683	Ankyrin repeat-containing domain [Domain]
	30	IPR002110	Ankyrin repeat [Repeat]
	33	IPR002110	Ankyrin repeat [Repeat]
	40	IPR020683	Ankyrin repeat-containing domain [Domain]

Gene function information

H-Inv ID		HIT000037119
H-Inv cluster ID		HIX0011990
Accession number		BC015422.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		NO;
Coding potential		Protein coding;
Definition		Similar to Uncharacterized protein;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (F1N4L2)  [Identity/coverage = 95.266%/99.41%] to Bos taurus (Bovine). protein.
Experimental evidence		Protein evidence
PubMed ID		19390049;  ALL;
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	ANKRD9
	HGNC aliases	NA
	HGNC name	ankyrin repeat domain 9
	DDBJ	ANKRD9
	UniProt	ANKRD9
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000087627
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_152326;
	Ensembl	ENST00000286918;
	Entrez Gene	Entrez Gene ID:122416;
	KEGG GENES	KEGG GENES(122416);
	GeneCard	ANKRD9;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Auto-annotated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	cytosol;  nuclear;
Target P	Other
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP)

Last modified:20-Apr-2012

Start End PDB_ID E-value Identity Coverage SCOP_ID 112 170 1b0zA 7e-04 16.9 59/442 c.80.1.2 153 198 1sw6A 5e-08 28.3 46/254 d.211.1.1

Related H-InvDB links GTOP

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	230972_at;
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	230972_at;
		HG-U133_Plus_2	230972_at;
		HG-U95	88910_at;
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	88910_at;
		HG-U95Av2	NA
		HuEx-1_0	3580360;  3580361;  3580362;  3580363;  3580364;  3580367;  3580368;  3580369;  3580370;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P307525;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P307525;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 156 .. 156 G/A rs2273905 - 5'UTR 271 .. 271 A/G rs8003479 - 5'UTR 289 .. 289 G/A rs79267427 - 5'UTR 598 .. 598 G/C rs112012041 - CDS Nonsynonymous[Ala68Pro] 1090 .. 1090 C/A rs11627980 - CDS Nonsynonymous[Leu232Met] 1262 .. 1262 C/G rs11627944 - CDS Nonsynonymous[Ala289Gly]  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  No data available Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;