H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000026212 Accession number: AL162042 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Conserved hypothetical protein.

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Transcript original information Accession number AL162042.1 CAGE tag ID NA EST ID NA Clone Number DKFZp761L1212 Experimental resources   NBRC ; HGPD ; Sequence data provider Provider:DKFZ/MIPS;  Annotation project H-Invitational FLcDNA Length of cDNA 3005[bp] (No. of exon:0)[A:536 T:897 G:482 C:1090] Devision HTC Molecular type mRNA Library origin Cell type NA Tissue type amygdala Develpmental stage adult

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

TTTTTTTTTGTTCCATCAAGAAGGCTCCCACAAAACTCCACAGCCAGTCC CGCCACTTCCTTCTCTTCCTCATTTCCTCACCTCCTTTATTTCCATTTAC CTCAGATGCAGCCCCAGTGAGCCGATGCACCCCTGCCATCGTGCCTGCCC ATCTGCTCCCCATCAAGCCCATCTGGATCCATTTCCTCTTAGCCACACTA CCCTCACTACACCCATGTTTACAGTTTAAGACTTCTTCTTACACAGGTCT TGCCCTCCATCCTGTTCTACCTTTCCTCCTCTCTTGCTCTCTACCTTGCG TCTTCCAAACATGAAGCCCTCATCCCAGCACCCGACACCCTGACCCTCTC CAAACTCTGGGCATACTCTCTCCCACTGGGCCCATTTGCTACTGACCTAA ACATCTCCCACTTAACTTTTGAAGGCCCTCCTCCTCAGCTTCACTATGAA CCTCTGCGTATATTTTGCATTACAAGCTATACCTCCATCCTTTCAGCCAC CCTTAAACAGCAGAAACGTGGATTCAGTGATTGTTGCAAATTGTCTCCAT CGCATTATGTCCTAACAGCTCCTCTGGCCTTTGCAAACACACTTCTACCT ACAATCTGGGATCAGTCTGCTTGAGTCCACTGTGAAGTCCCTAAAGTTAC CTGTCTGTGGTTTTTATGCAGGTGCCATGTTAGTGTGCAGTGCTGACCAG CTTCCTTTGTTTAACCAATCACTTTGGCCCTTAACCCACTTTCTCCTAAA GGCTGCTGGAGCTATTGCTTCATTCTGCCTCTGTGGTCTGGTCTTAATAC CAGGCATACCACCAACGTATCCTGAGATCTGCGGACACCTCAGTTTGGGA CTCTGAATTCTGCCTCCCCTCTATTCACTTGGCCCCTTTACCAATGTTGA GACCCTCAAATTCATGAGATTCTCCCCCTATCATGCACCTTCTGTCCTTT TTTATGTCCATCAACTTCCTGGACCCATCTTGAGTCTGACATCATGCCTT GAGGACTTTAGAGCAGTTTCTGTTTTTCTAGTTAATATGTACTGCACATC CCCCTACTGTTATTTTCCAGAGACCCTCAGCTTCATCTTCAGCATCCACT CCCTCCTCTGCCACTTTCTAAGTCAATGACTGCACTCTGCAGTCATTTCC TTGATGTCAGCTCCCTTCCTGCCCTGCCCTTGCTGCTGCCAACATTGCCA TCCTTTTTATCCACAATATGCAGCATTGGATCCATCTGCTATCTTAAGGC ACCCTTAACCGTCCTACATTTTTGGTTCTACTATGCTGGAGACAATTGTT TCCTGTCTCAAAGTCAATCCACCTGACATTTCATCAGTTCCCATGCCCTT CATTGACACTGTGGTGCCCAGCTTTTCCAAGGTGCCAGCATCTTCTACAT CCTCCTTGTCTATTGCCATCCTCCCTCCTGTCCTTCATTCCTTGCTTATC TTACCCACACTATGCTTTGTCATCCATGAACTGCGTCACACACTTTGCCC CATCTGGGGTAAAGTCCCTGGATTCTCTGCATCCGCTCCCTCCCTCTTGG CGCCTGGCATGCCTCCTTTACTGCAGCGCATCCCTCCTGCTCTCAACAAG CTCTCCTCTCTTAGCTGCTGGGCTCCATTGCCTGCTCCGACTCATTCTTC TTGCCCATTAGGGAACACCTCTCCTCTGTCCTCCTCTCCCATGTGTTGCA AACTCATCCCCTGATGTCCCAGCAGTCAGCCCCTGGGGCGCAGGTTGGTC GTTTCTCCTGCTTTCCTCCTCTACTGCATAGCACGGTACTGTCCCACCTG CACCCTCCTGCATTCTCTCAGCACGATCTGTGATTCTCCCACTGGCCTAA TTCGTGATCTCAGGTACCTCCTCCCTTCTTGACCTGGCCCCGCACCCGCT GCTCCGCCAGATGCAGTCATCTCTGCATCACACGTACTGCACTGAATCCA CCTGCTCTGCCCAGCTATCAGTGTCCACATCCCAGTGGTCCAGGCTATGG GTACCTTCCAGCACCCCACAACCCTGACTCCCCAAAACCTTCTCAATTCC CTTTGCATCCTTTCTTTCACATTCTTGTGAAAACACTCTGGGGAACATGC GCCTGTGAATTTCCTACCTTCTTCCTGTCACCACAGCACTTTTGTCATCA GCGCTCACTGCTGTCCCCACTCCACCTGCCCACCCTCTTCCCCCACATCC CACGGGTACAAACGCACCCAGTCTCAACCTGACTCTCCCGCCCTGCCTGA AACCCGGCTCCTCCGCTCCTCCTGGGTCCTCCTGTCAGTCCCACCCTCCT CCTGCCTCCTCCCTCCTTAGCACCGATGTCTTCAAGACGCTCTTCTTCCA CGCTGTCTCCATTCCCCTTTGCGCCTTTCCTCCCCGTGACAACAGATCCC CTGCTCTCTGCTCTCACCCGCACAGCCCACTTCCTCTGAGTCACTGGGCC CTTCTCTGGGCCTCACTCCTCCACCTGAGTCCTTGAGTCTGGGACCGAGG CGTTGGAAACCCCAGCTGCACCACCGTGGTCCCATTGCCTTTTCAGCTAC ATCCATTTGTTCGCTGTCATCCTTGTCCTGGTCTGTCAGGAACTGTGTTC TAACACCTGACAGTCTTGACCCTGATGCCTCCATCAGCCCTGCCACACAT GCATCTTCCCCTCTCACTCCACATGTCTGCCCGGCTCTCCATCCTCCCGT GTCCACCAGTGATTCTCACCCGAGGATGCAGGACCCCAAGGCGGCCTATC AGAAGCATCTTTTGGGCTCGGTTTCTTCTTTTGCTATTGTCTATGTTCCT TTTAGAGATTGCTTTTTTTTCCCCTTACTTTTTCTGAGCTGAACACTGCT CACCCTTCAGATGATTGGATAGGCCTGCCTGGGGGTCCATGCCCCCAGCC CTCCCTCGGGTGAAACCCACCCCCCACCCCAGATAAGAATCACTGCTGTG GACAGCCACCTTGACTCCCTGGCCTTTACTCTGCCATTTCCAGCCCACGC GTCCG

Gene structure information

H-Inv cluster ID		HIX0159209
Genomic location	Chromosome	UM
	Location	NA
	Position	NA
	Strand	NA
Possible duplicated location(s)		NA
Gene structure		exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000337007 Predicted CDS 1283..1714;  143[aa];  Orientation:+2;  Codon Adaptation Index (CAI). 0.723

MLETIVSCLKVNPPDISSVPMPFIDTVVPSFSKVPASSTSSLSIAILPPV LHSLLILPTLCFVIHELRHTLCPIWGKVPGFSASAPSLLAPGMPPLLQRI PPALNKLSSLSCWAPLPAPTHSSCPLGNTSPLSSSPMCCKLIP*

Gene function information

H-Inv ID		HIT000026212
H-Inv cluster ID		HIX0159209
Accession number		AL162042.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		Representative transcript;
Coding potential		Protein coding;
Definition		Conserved hypothetical protein.
Similarity category		Category: Conserved hypothetical protein(Category IV).
		Conserved hypothetical protein.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000337007
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Human curated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	plasma membrane;  extracellular;  mitochondria;
Target P	Other
SOSUI	membrane protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.