H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000022348 Accession number: AK097494 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Similar to T. brucei spp.-specific protein;
 
 

Transcript original information
Accession number AK097494.1
CAGE tag ID NA
EST ID NA
Clone Number TESTI2017035
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2331[bp] (No. of exon:1)[A:629 T:477 G:544 C:681]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type testis
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes UM gene supported by high quality evidences.

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0017743
Genomic location  G-integra Help Chromosome 4
Location 4p16.1
Position 8747129- 8749439
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100133683
KEGG GENES KEGG GENES(100133683)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000336868
Predicted CDS 943..2064;  373[aa];  Orientation:+1; 
Codon Adaptation Index (CAI). 0.744

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000022348
H-Inv cluster ID Locus viewHIX0017743
Accession number AK097494.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Similar to T. brucei spp.-specific protein;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (C9ZXZ0)  [Identity/coverage = 50.0%/58.28%] to Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972). protein.
Experimental evidence Protein evidence
PubMed ID 20404998ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000336868
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100133683
KEGG GENES KEGG GENES(100133683)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes UM gene supported by high quality evidences.
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:26-Mar-2013
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  603663603783605480609456611637611863612335
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(100133683)
Disease Entrez Gene ID:(100133683)
Substance Entrez Gene ID:(100133683)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
99 .. 99 G/-/A rs36191107 + 5'UTR
99 .. 99 G/A rs74211759 + 5'UTR
156 .. 156 G/A rs36147595 + 5'UTR
464 .. 464 C/A rs36150748 + 5'UTR
685 .. 685 G/- rs36128554 + 5'UTR
1037 .. 1037 C/T rs36151537 + CDS Nonsynonymous[Thr32Ile]
2158 .. 2158 G/T rs36193730 + 3'UTR
2301 ^ 2302 -/C rs36151459 + 3'UTR
2317 .. 2317 A/G rs36157834 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MIRb 473 533 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer