H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000022181 Accession number: AK097327 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK097327.1
CAGE tag ID NA
EST ID NA
Clone Number STOMA2005120
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 1944[bp] (No. of exon:2)[A:471 T:492 G:490 C:491]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type stomach
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0000001
Genomic location  G-integra Help Chromosome 1
Location 1p36.33
Position 752751- 755214
Strand +
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:400728
KEGG GENES KEGG GENES(400728)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000086294
Predicted CDS 140..619;  159[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.691
Database links RefSeq NA
UniProt Q8N852
CCDS NA

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000022181
H-Inv cluster ID Locus viewHIX0000001
Accession number AK097327.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000086294
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:400728
KEGG GENES KEGG GENES(400728)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  peroxisome; 
Target P Not predicted
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
2 .. 2 C/T rs143872709 + 5'UTR
46 .. 46 C/T rs148649543 + 5'UTR
144 .. 144 C/T rs3131971 - CDS Nonsynonymous[Pro2Leu]
168 .. 168 G/T rs200599638 + CDS Nonsynonymous[Arg10Leu]
435 .. 435 G/A rs199998726 + CDS Nonsynonymous[Gly99Glu]
485 .. 485 A/G rs200960205 + CDS Nonsynonymous[Thr116Ala]
519 .. 519 G/C rs61770172 + CDS Nonsynonymous[Ser127Thr]
541 .. 541 A/C rs200239555 + CDS Nonsynonymous[Leu134Phe]
654 .. 654 G/C rs201778886 + 3'UTR
655 .. 655 A/C rs61770173 + 3'UTR
675 .. 675 C/T rs3131970 - 3'UTR
724 .. 724 G/C rs2073814 - 3'UTR
788 .. 788 G/A rs185491820 + 3'UTR
791 .. 791 G/A rs2073813 - 3'UTR
819 .. 819 C/T rs2977622 - 3'UTR
835 .. 835 C/T rs12184325 + 3'UTR
851 .. 851 T/G rs12184335 + 3'UTR
893 .. 893 T/C rs12184336 + 3'UTR
905 .. 905 G/A rs185858250 + 3'UTR
912 .. 912 G/A rs3131969 - 3'UTR
922 .. 922 G/A rs3131968 - 3'UTR
928 .. 928 A/G rs192434564 + 3'UTR
941 .. 941 G/A rs12184313 + 3'UTR
977 .. 977 G/A rs183940249 + 3'UTR
1064 .. 1064 C/T rs3131967 - 3'UTR
1114 .. 1114 C/T rs200409415 + 3'UTR
1126 .. 1126 T/C rs115791529 + 3'UTR
1159 .. 1159 T/G rs114339855 + 3'UTR
1163 .. 1163 G/A rs150578204 + 3'UTR
1174 .. 1174 C/G rs139464808 + 3'UTR
1186 .. 1186 C/T rs113620833 + 3'UTR
1188 .. 1188 G/T rs142682604 + 3'UTR
1193 .. 1193 G/A rs187780696 + 3'UTR
1233 .. 1233 A/G rs3115859 - 3'UTR
1240 .. 1240 G/A rs190647965 + 3'UTR
1310 .. 1310 G/A rs182886994 + 3'UTR
1359 .. 1359 A/G rs10454459 + 3'UTR
1401 .. 1401 A/G rs10454460 + 3'UTR
1463 .. 1463 C/T rs6688221 + 3'UTR
1474 .. 1474 G/A rs187321488 + 3'UTR
1475 .. 1475 C/T rs6688224 + 3'UTR
1488 .. 1488 C/G rs145604921 + 3'UTR
1506 .. 1506 T/C rs192700513 + 3'UTR
1591 .. 1591 T/G rs10454461 + 3'UTR
1624 .. 1624 G/A rs184597775 + 3'UTR
1667 .. 1667 C/G rs111491913 + 3'UTR
1684 .. 1684 G/A rs10454454 + 3'UTR
1694 .. 1694 T/C rs3131966 - 3'UTR
1719 .. 1719 G/C rs187552557 + 3'UTR
1817 .. 1817 C/G rs111783440 + 3'UTR
1865 .. 1865 A/G rs10454455 + 3'UTR
1892 .. 1892 T/C rs192597679 + 3'UTR
1911 .. 1911 G/C rs185649621 + 3'UTR
1942 .. 1942 G/T rs10454456 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MLT1I 1176 1334 +
MER44D 1841 1944 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer