H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000022181 Accession number: AK097327 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number AK097327.1
CAGE tag ID NA
EST ID NA
Clone Number STOMA2005120
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (FAM87B) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (FAM87B);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 1944[bp] (No. of exon:2)[A:471 T:492 G:490 C:491]
Devision HUM
Molecular type mRNA
Library origin Cell type NA
Tissue type stomach
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NMD predicted; 
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0000001
Genomic location  G-integra Help Chromosome 1
Location 1p36.33
Position 752751- 755214
Strand +
Possible duplicated location(s) NA
Gene structure 2 exon(s)
Database links RefSeq NA
Ensembl ENST00000326734;  ENST00000518012; 
Entrez Gene Entrez Gene ID:400728; 
KEGG GENES KEGG GENES(400728); 
GeneCard GeneCardFAM87B;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000086294
Predicted CDS 140..619;  159[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.692
Database links RefSeq NA
UniProt Q8N852; 
CCDS NA

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000022181
H-Inv cluster ID Locus viewHIX0000001
Accession number AK097327.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol FAM87B
HGNC aliases NA
HGNC name family with sequence similarity 87, member B
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000086294
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl ENST00000326734;  ENST00000518012; 
Entrez Gene Entrez Gene ID:400728; 
KEGG GENES KEGG GENES(400728); 
GeneCard GeneCardFAM87B;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT extracellular;  peroxisome; 
Target P Not predicted
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  115665;  116600;  155600;  600975;  605225;  605606;  606788;  606852;  606928;  607317;  607671;  608543;  608553;  608995;  610320;  612367;  612596; 
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(400728)
Disease Entrez Gene ID:(400728)
Substance Entrez Gene ID:(400728)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
144 .. 144 C/T rs3131971 - CDS Nonsynonymous[Pro2Leu]
519 .. 519 G/C rs61770172 + CDS Nonsynonymous[Ser127Thr]
655 .. 655 A/C rs61770173 + 3'UTR
675 .. 675 C/T rs3131970 - 3'UTR
724 .. 724 G/C rs2073814 - 3'UTR
791 .. 791 G/A rs2073813 - 3'UTR
819 .. 819 C/T rs2977622 - 3'UTR
835 .. 835 C/T rs12184325 + 3'UTR
851 .. 851 T/G rs12184335 + 3'UTR
893 .. 893 T/C rs12184336 + 3'UTR
912 .. 912 G/A rs3131969 - 3'UTR
922 .. 922 G/A rs3131968 - 3'UTR
941 .. 941 G/A rs12184313 + 3'UTR
1064 .. 1064 C/T rs3131967 - 3'UTR
1126 .. 1126 T/C rs115791529 + 3'UTR
1159 .. 1159 T/G rs114339855 + 3'UTR
1186 .. 1186 C/T rs113620833 + 3'UTR
1233 .. 1233 A/G rs3115859 - 3'UTR
1359 .. 1359 A/G rs10454459 + 3'UTR
1401 .. 1401 A/G rs10454460 + 3'UTR
1463 .. 1463 C/T rs6688221 + 3'UTR
1475 .. 1475 C/T rs6688224 + 3'UTR
1591 .. 1591 T/G rs10454461 + 3'UTR
1667 .. 1667 C/G rs111491913 + 3'UTR
1684 .. 1684 G/A rs10454454 + 3'UTR
1694 .. 1694 T/C rs3131966 - 3'UTR
1817 .. 1817 C/G rs111783440 + 3'UTR
1865 .. 1865 A/G rs10454455 + 3'UTR
1942 .. 1942 G/T rs10454456 + 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MLT1I 1176 1334 +
MER44D 1841 1944 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;