H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000021230 Accession number: AK096375 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Hypothetical protein.
 
 

Transcript original information
Accession number AK096375.1
CAGE tag ID NA
EST ID NA
Clone Number NT2RP7013002
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2063[bp] (No. of exon:1)[A:549 T:614 G:398 C:502]
Devision HUM
Molecular type mRNA
Library origin Cell type teratocarcinoma
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0019772
Genomic location  G-integra Help Chromosome 12
Location 12p13.31
Position 9218588- 9220651
Strand +
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NR_026971; 
Ensembl ENST00000499762; 
Entrez Gene Entrez Gene ID:144571; 
KEGG GENES KEGG GENES(144571); 
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000093134
Predicted CDS 372..692;  106[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.769

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000021230
H-Inv cluster ID Locus viewHIX0019772
Accession number AK096375.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help NO; 
Coding potential  Help Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000093134
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NR_026971; 
Ensembl ENST00000499762; 
Entrez Gene Entrez Gene ID:144571; 
KEGG GENES KEGG GENES(144571); 
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Auto-annotated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT extracellular;  cytosol;  nuclear;  Other; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1558450_at;  1564139_at; 
HG-U95 68462_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D 68462_at; 
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3404060;  3404061;  3404062;  3443350;  3443351;  3443352;  3443354; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  107920;  108600;  130080;  609113;  612372; 
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(144571)
Disease Entrez Gene ID:(144571)
Substance Entrez Gene ID:(144571)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
19 .. 19 A/C rs10771309 + 5'UTR
34 .. 34 G/A rs12314521 + 5'UTR
68 .. 68 A/T rs116858330 + 5'UTR
135 .. 135 T/G rs11612398 + 5'UTR
138 .. 138 C/T rs78407730 + 5'UTR
173 .. 173 G/T rs76055044 + 5'UTR
174 .. 174 A/T rs115567754 + 5'UTR
297 .. 297 G/A rs114837650 + 5'UTR
319 .. 319 G/T rs12314690 + 5'UTR
484 .. 484 A/T rs57139383 + CDS Nonsynonymous[Asp38Val]
612 .. 612 C/T rs61916014 + CDS AA-STOP[Gln81*]
658 .. 658 G/C rs112941874 + CDS Nonsynonymous[Arg96Pro]
702 .. 702 A/G rs115418043 + 3'UTR
769 .. 769 T/A rs78585611 + 3'UTR
1142 .. 1142 G/A rs12316559 + 3'UTR
1163 .. 1163 C/G rs117681494 + 3'UTR
1313 .. 1313 G/T rs3026229 - 3'UTR
1379 .. 1379 C/A rs1805667 - 3'UTR
1513 .. 1513 A/G rs1805688 - 3'UTR
1541 .. 1541 T/C rs76644130 + 3'UTR
1715 .. 1715 A/T rs112585897 + 3'UTR
1780 .. 1780 T/G rs3190224 - 3'UTR
1788 .. 1788 T/A rs1802966 - 3'UTR
1791 .. 1791 G/A rs1049985 - 3'UTR
1825 .. 1825 T/G rs1130840 - 3'UTR
1850 .. 1850 G/C rs111482363 + 3'UTR
1855 .. 1855 A/T rs111920544 + 3'UTR
1913 .. 1913 C/G rs1805687 - 3'UTR
1961 .. 1961 T/A rs3180682 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
MER52D 33 678 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;