H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Invitational ID: HIT000021103 Accession number: AK096248 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Similar to Uncharacterized protein; Fragment;
 
 

Transcript original information
Accession number AK096248.1
CAGE tag ID NA
EST ID NA
Clone Number NT2NE2013019
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (ZNF843) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (ZNF843);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 1910[bp] (No. of exon:3)[A:359 T:350 G:600 C:601]
Devision HUM
Molecular type mRNA
Library origin Cell type teratocarcinoma
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) GAGTAG; 
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0012969
Genomic location  G-integra Help Chromosome 16
Location 16p11.2
Position 31445815- 31454346
Strand -
Possible duplicated location(s) NA
Gene structure 3 exon(s)
Database links RefSeq NM_001136509; 
Ensembl ENST00000315678; 
Entrez Gene Entrez Gene ID:283933; 
KEGG GENES KEGG GENES(283933); 
GeneCard GeneCardZNF843;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA-genome alignmentcDNA-genome alignment; 

Predicted CDS information
HIP ID HIP000094491
Predicted CDS 728..1438;  236[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.764
Database links RefSeq NA
UniProt B3KTX8; 
CCDS NA

Motif information
ORF

length(236),orf(728:1438) MRSLPFALTVESVSARAPTCCSTGRFTQGRQPCKCKACGRGFTQSASLLQ HWRVHSDWRETLSLSPVRQDLLWPLQPHQAPASPLGRSHSSAGVRQGFSG QLCCWLTKEHTLAEALRLSPVPAGFWGPVEADRPPANSHRRVCPFCCCSC GDSVNEKTSLSQRVLPHPGEKTCRGGSVESVSLAPSSVAPDSTSGLRPCG SPGSFLQHLPPSTLLPRPPFLYPGWLGLRAPTTTPS* 		a.a.
length		 InterPro Name
length(28), motif(29:56) 28 IPR013087 Zinc finger, C2H2-type/integrase, DNA-binding [Domain]
length(23), motif(33:55) 23 IPR015880 Zinc finger, C2H2-like [Domain]
length(23), motif(33:55) 23 IPR007087 Zinc finger, C2H2-type [Domain]
length(28), motif(33:60) 28 IPR007087 Zinc finger, C2H2-type [Domain]
length(28), motif(145:172) 28 IPR007087 Zinc finger, C2H2-type [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000021103
H-Inv cluster ID Locus viewHIX0012969
Accession number AK096248.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Similar to Uncharacterized protein; Fragment;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (F1NKH7)  [Identity/coverage = 65.385%/7.54%] to Gallus gallus (Chicken). protein.
Experimental evidence Protein evidence
PubMed ID 15592404;  ALL; 
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol ZNF843
HGNC aliases NA
HGNC name zinc finger protein 843
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
 Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000094491
No. of interaction 2
Interaction partner(s) HIP000061867;  HIP000080010; 
BIND NA
DIP NA
MINT MINT-63141;  MINT-64459; 
HPRD 15455; 
IntAct NA
Database links RefSeq NM_001136509; 
Ensembl ENST00000315678; 
Entrez Gene Entrez Gene ID:283933; 
KEGG GENES KEGG GENES(283933); 
GeneCard GeneCardZNF843;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool;  TACTTACT; 
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function zinc ion binding (GO:0008270);  nucleic acid binding (GO:0003676); 
Cellular component intracellular (GO:0005622); 

Subcellular localization information  Last modified:20-Apr-2012
WoLF PSORT nuclear; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:20-Apr-2012
Start End PDB_ID E-value Identity Coverage SCOP_ID
29 59 1rhyA2 5e-06 9.7 31/94 d.14.1.9
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1564362_x_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3688382;  3688387;  3688388;  3688389;  3688390;  3688391;  3688392;  3688393;  3688394;  3688395;  3688396;  3688397;  3688398; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  156850;  605013;  605021;  606668;  607339;  608558;  608903;  610260; 
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(283933)
Disease Entrez Gene ID:(283933)
Substance Entrez Gene ID:(283933)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA; 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
212 .. 212 T/C rs114902025 - 5'UTR
1013 .. 1013 C/A rs116147135 - CDS Nonsynonymous[Gln96Lys]
1074 .. 1074 T/G rs72789330 - CDS Nonsynonymous[Leu116Arg]
1110 .. 1110 C/T rs74015530 - CDS Nonsynonymous[Pro128Leu]
1200 .. 1200 C/A rs80346735 - CDS Nonsynonymous[Thr158Asn]
1204 .. 1204 C/A rs74015528 - CDS Synonymous[Ser159Ser]
1399 .. 1399 G/C rs76281122 - CDS Synonymous[Gly224Gly]
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
AluSx1 1393 1571 -
AluY 1621 1906 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD); 
Related H-InvDB links VaryGeneVaryGene;  Repeat mask viewerRepeat Mask Viewer;