H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
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Definition*
Data source ID
---
CCDS ID
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FR Accession number
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HGNC gene name*
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H-Invitational ID:
HIT000019031
Accession number:
AK094176
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Conserved hypothetical protein.
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK094176.1
CAGE tag ID
NA
EST ID
NA
Clone Number
ASTRO2014961
Experimental resources
NBRC
;
HGPD
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
2096[bp] (No. of exon:1)[A:692 T:641 G:420 C:343]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
normal astrocytes (NHA5732)
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
TGTGACTTGTGTACATAAGCATTTTTGAAATGGAAAAGCAATTCTGGGAC AACAAGGGATTCTGGAAGTGTCAGGAAAAGGGTAAGTTGAAGAAAGGACT TTTAATTCAACAGGTCTTGGGTAGCAGAAGAGATATAAGCCTTTTAAAGA GAGAGAAGCTAATTGGTTTCTGATAATAGGTGCCTGTTGGAAAGAAAATA TTGACCTCTTGGGATGGTTTGGGTTTGGCAAAGGTGCAAGGTCATGGTAT CTCAGTGGGATTTGACTCCTCATTTGGATACAAGTTTATTCTATGTGCCT CTGGTGGTTCTTTTCTTTTTAAAATTTTTCCTTTTTATTTTTTTGTTAAC TTTTATGTTAAGGGTACATGTGCAGGTTGGTTATATAGGTAAATTGCATG TCACAGGGGCTTGGCATACAGATTATTTTATCACCCAGGTAATAACCATT GTACCCAATAGGTAGATTTTTGATCCTCACCCTCCTCCCACCCTCATTTC TGTTCAGTTCAAATTAACATATTGTTGATCTCCTTCTATATGTGGGGTTT GTAGAGAATAGAAAAAGAAGTTATACTCTCACAATTATAATTAACATTGA CTGAGAACTTATTATGTGCCCAAGCTGTTATAAGAATTTTATAATTATTA ACTAGTTTAATTTTTTGTGAGATGCGCACTTTTACTACCCTCATTTTATG GAGAAGAAAACTAAGGCAGATAGAAGCTAACTTACTTAGGCCTTGTGGCT GATAGATGGTGGAGCTGGGCAGTTGGCACTACCATTCAGTCTGCCTTATA CCAATAACGAAGTTGTTTTTGCAACTGAAAACTGACCTGAGCATGTATGA TTGGGTTTACTCACTAAAAAGGGAGGTCTAGGAGATAAAGGGGACAGTTA GACCTTTGGAGTACCAGGATCACCTTGAGATGACAAAGCCAACCTGGCTC ATGATAATTCATTTCAGCACATTATTGACGCAAACTAGAGAGCAGAGAGG CAGGCAAACCTTGCTAACCAAACAAATATGCTGCCACCCCCAGGACATCA TAAGTCACCTGGGGACAGGATGTGCTCCTGAATCCCTTCAGAGACTGGAT GTCCTCAAAACAGCCCAGTTAGAAGGATTGATGGGTCGAGCTAGTCACAC AAATGAAAATATCCATGTGGACCTCAACCGGCTGCTGTTGCTTCCTAAGT CCCTTAGTAATTCATAAACCCAAATCCAATGAATGCTAAAATGACTTGCA GCTGAAGTCTCGATCACACTGTGCTGAAACAACTTGGATGCATAAGTAAA TAAATCCTCTTTCAAAGCTCATTAAAGTTTCTAGAAAACATTCACTGCAT CAGCTAAACCACTGCAGCCAGTAAGCTTCAGGGAGTTCAGTATATTGAGG AACATTAAATCTTTCAAGTCATTAGAAGGCAATTTAACAGGCAATCTCCT GACTGGTGGGCAGTCGCCATAGATACAAACATGGAAAATTTTTTGCCTGT AGTTAGACCTCAGTAAATACTAAATGAGTAAATGATCAGTAGTCACAGTG CCTGGTGAGTCCACAAACATCTATTTAAGTCATTATTAAAGATTTTGCAT TTATAATGAAAATAATAGAAAGCAATATTATTATAATTCTAGGAGGGAAA TAAAAAATTAAAAAATGCAATTGAGTAAAGAATTATGCATCATGAATCCT GGTACTGAGATGAGAAGGTTTGGTTATAGAAAGAGTTGAAAGTGGAGGAG GAAGAAGAAGACTGATGGAGATGACTGTGGAACTATGGACACTTGAAGTT GGATATTTCAGAAATGAATGGCACTGAATTTTTGAACATACATTTTACCA TGAGATATTTTAAGTATAGAAAGTATAAACAATAACACAATGAGCATCCC TATACCCACCACCTAGTTTCATCAAATGTTAACATTTTCATGGTATTATT TTTTATTAGGTATTTTAAAGTACATTTCCAAAATATATGACTTAAAAATA TCTTAATTACAGATTGGTTAAATAAATCAAAGCATAGCCATATATTGGAA TATTCTGCAGTTATTTAAAAATCGTGCATTAAAAGAATTTTCACTT
Gene structure information
H-Inv cluster ID
HIX0002471
Genomic location
Chromosome
2
Location
2q21.3
Position
135622097- 135624192
Strand
-
Possible duplicated location(s)
NA
Gene structure
1 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000106920
Predicted CDS
930..1217; 95[aa]; Orientation:+3;
Codon Adaptation Index (CAI).
0.696
MTKPTWLMIIHFSTLLTQTREQRGRQTLLTKQICCHPQDIISHLGTGCAP ESLQRLDVLKTAQLEGLMGRASHTNENIHVDLNRLLLLPKSLSNS*
Gene function information
H-Inv ID
HIT000019031
H-Inv cluster ID
HIX0002471
Accession number
AK094176.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence
NA
PubMed ID
NA
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
NA
HGNC aliases
NA
HGNC name
NA
DDBJ
NA
UniProt
NA
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000106920
No. of interaction
NA
Interaction partner(s)
NA
BIND
NA
DIP
NA
MINT
NA
HPRD
NA
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
NA
KEGG GENES
NA
GeneCard
NA
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
extracellular; mitochondria; cytosol;
Target P
signal peptide
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
236387_at;
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
236387_at;
HG-U133_Plus_2
236387_at;
HG-U95
57557_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
57557_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2507187; 2577617; 2577618;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
NA
Whole Human Genome Oligo Microarray:PGID247
NA
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
27 .. 27
G/A
rs114922421
-
5'UTR
116 .. 116
C/A
rs114086767
-
5'UTR
185 .. 185
T/G
rs3814358
+
5'UTR
241 .. 241
G/A
rs76719868
-
5'UTR
293 .. 293
A/G
rs111773650
-
5'UTR
326 .. 326
T/G
rs183336093
-
5'UTR
364 .. 364
G/T
rs80175926
-
5'UTR
584 .. 584
A/G
rs13396843
-
5'UTR
655 .. 655
G/A
rs115017378
-
5'UTR
669 .. 669
G/A
rs146703987
-
5'UTR
676 .. 676
G/A
rs7593370
-
5'UTR
809 .. 809
G/A
rs191709554
-
5'UTR
870 .. 870
A/-
rs35500982
-
5'UTR
951 .. 951
A/G
rs186805409
-
CDS
Nonsynonymous[Met8Val]
979 .. 979
C/T
rs183093018
-
CDS
Nonsynonymous[Thr17Met]
980 .. 980
G/T
rs191186169
-
CDS
Synonymous[Thr17Thr]
981 .. 981
C/A
rs185282919
-
CDS
Nonsynonymous[Gln18Lys]
1073 .. 1073
T/C
rs74632216
-
CDS
Synonymous[Cys48Cys]
1082 .. 1082
A/G
rs181000411
-
CDS
Synonymous[Glu51Glu]
1261 .. 1261
C/T
rs189389264
-
3'UTR
1262 .. 1262
G/A
rs142446201
-
3'UTR
1269 .. 1269
C/T
rs73962619
-
3'UTR
1293 .. 1293
T/G
rs117416454
-
3'UTR
1333 .. 1333
A/G
rs3819121
+
3'UTR
1343 .. 1343
C/T
rs145394004
-
3'UTR
1385 .. 1385
G/A
rs6430552
-
3'UTR
1390 .. 1390
G/A
rs186356284
-
3'UTR
1499 .. 1499
G/C
rs182184453
-
3'UTR
1543 .. 1543
T/C
rs190081944
-
3'UTR
1670 .. 1670
A/G
rs74265411
-
3'UTR
1718 .. 1718
G/A
rs185188335
-
3'UTR
1741 .. 1741
A/-
rs59085680
-
3'UTR
1952 .. 1952
T/G
rs140441618
-
3'UTR
1997 ^ 1998
-/A
rs11435842
-
3'UTR
1999 ^ 2000
-/A
rs11371015
-
3'UTR
2015 .. 2015
T/C
rs192904023
-
3'UTR
2055 .. 2055
C/A
rs151231339
-
3'UTR
2067 .. 2067
A/T
rs188702229
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
L1PA15
338
495
-
MIR
583
796
-
Tigger16a
1551
1833
-
L1ME3Cz
1840
1945
-
L1M5
2012
2088
+
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;