H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Invitational ID: HIT000019031 Accession number: AK094176 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Conserved hypothetical protein.
 
 

Transcript original information
Accession number AK094176.1
CAGE tag ID NA
EST ID NA
Clone Number ASTRO2014961
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ;
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 2096[bp] (No. of exon:1)[A:692 T:641 G:420 C:343]
Devision HUM
Molecular type mRNA
Library origin Cell type normal astrocytes (NHA5732)
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0002471
Genomic location  G-integra Help Chromosome 2
Location 2q21.3
Position 135622097- 135624192
Strand -
Possible duplicated location(s) NA
Gene structure 1 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000106920
Predicted CDS 930..1217;  95[aa];  Orientation:+3; 
Codon Adaptation Index (CAI). 0.696

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000019031
H-Inv cluster ID Locus viewHIX0002471
Accession number AK094176.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript; 
Coding potential  Help Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Experimental evidence NA
PubMed ID NA
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
DDBJ NA
UniProt NA
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000106920
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA


Subcellular localization information  Last modified:27-May-2015
WoLF PSORT extracellular;  mitochondria;  cytosol; 
Target P signal peptide
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 236387_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 236387_at; 
HG-U133_Plus_2 236387_at; 
HG-U95 57557_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 57557_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2507187;  2577617;  2577618; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
27 .. 27 G/A rs114922421 - 5'UTR
116 .. 116 C/A rs114086767 - 5'UTR
185 .. 185 T/G rs3814358 + 5'UTR
241 .. 241 G/A rs76719868 - 5'UTR
293 .. 293 A/G rs111773650 - 5'UTR
326 .. 326 T/G rs183336093 - 5'UTR
364 .. 364 G/T rs80175926 - 5'UTR
584 .. 584 A/G rs13396843 - 5'UTR
655 .. 655 G/A rs115017378 - 5'UTR
669 .. 669 G/A rs146703987 - 5'UTR
676 .. 676 G/A rs7593370 - 5'UTR
809 .. 809 G/A rs191709554 - 5'UTR
870 .. 870 A/- rs35500982 - 5'UTR
951 .. 951 A/G rs186805409 - CDS Nonsynonymous[Met8Val]
979 .. 979 C/T rs183093018 - CDS Nonsynonymous[Thr17Met]
980 .. 980 G/T rs191186169 - CDS Synonymous[Thr17Thr]
981 .. 981 C/A rs185282919 - CDS Nonsynonymous[Gln18Lys]
1073 .. 1073 T/C rs74632216 - CDS Synonymous[Cys48Cys]
1082 .. 1082 A/G rs181000411 - CDS Synonymous[Glu51Glu]
1261 .. 1261 C/T rs189389264 - 3'UTR
1262 .. 1262 G/A rs142446201 - 3'UTR
1269 .. 1269 C/T rs73962619 - 3'UTR
1293 .. 1293 T/G rs117416454 - 3'UTR
1333 .. 1333 A/G rs3819121 + 3'UTR
1343 .. 1343 C/T rs145394004 - 3'UTR
1385 .. 1385 G/A rs6430552 - 3'UTR
1390 .. 1390 G/A rs186356284 - 3'UTR
1499 .. 1499 G/C rs182184453 - 3'UTR
1543 .. 1543 T/C rs190081944 - 3'UTR
1670 .. 1670 A/G rs74265411 - 3'UTR
1718 .. 1718 G/A rs185188335 - 3'UTR
1741 .. 1741 A/- rs59085680 - 3'UTR
1952 .. 1952 T/G rs140441618 - 3'UTR
1997 ^ 1998 -/A rs11435842 - 3'UTR
1999 ^ 2000 -/A rs11371015 - 3'UTR
2015 .. 2015 T/C rs192904023 - 3'UTR
2055 .. 2055 C/A rs151231339 - 3'UTR
2067 .. 2067 A/T rs188702229 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L1PA15 338 495 -
MIR 583 796 -
Tigger16a 1551 1833 -
L1ME3Cz 1840 1945 -
L1M5 2012 2088 +
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer