H-InvDB x AHG DB
Transcript view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Invitational ID: HIT000016178 Accession number: AK091311 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Juxtaposed with another zinc finger protein 1; TAK1-interacting protein 27; Zinc finger protein 802;
 
 

Transcript original information
Accession number AK091311.1
CAGE tag ID NA
EST ID NA
Clone Number DFNES2007634
Experimental resources NBRC: NITE Biological Resource Center  NBRC ; HGPD: Human Gene and Protein Database HGPD ; Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (JAZF1) ; Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (JAZF1);
Sequence data provider Project:FLJ; Provider:FLJ/HRI; 
Annotation project H-Invitational FLcDNA
Length of cDNA 3116[bp] (No. of exon:5)[A:914 T:927 G:578 C:697]
Devision HUM
Molecular type mRNA
Library origin Cell type normal dermal fibroblasts (Neonatal Skin) (NHDF2564)
Tissue type NA
Develpmental stage NA
Mini-G
Sequence quality information
CDS feature Complete CDS
Kozak sequence NA
PolyA NA
Vector/adapter sequence NA
Frame shift NA
Remaining intron NA
Splice site acceptor (NAGNAG) NA
Transcript quality feature NA
Notes NA

Gene structure information  G-integra H-DBAS cDNA-genome alignment
H-Inv cluster ID HIX0006554
Genomic location  G-integra Help Chromosome 7
Location 7p15.1-7p15.2
Position 27870201- 28220362
Strand -
Possible duplicated location(s) NA
Gene structure 5 exon(s)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:221895
KEGG GENES KEGG GENES(221895)
GeneCard GeneCardJAZF1*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA-genome alignmentcDNA-genome alignment

Predicted CDS information
HIP ID HIP000106384
Predicted CDS 167..898;  243[aa];  Orientation:+2; 
Codon Adaptation Index (CAI). 0.817
Database links RefSeq NP_778231
UniProt Q5RDF5Q86VZ6
CCDS CCDS5416

Motif information
ORF

length(243),orf(167:898)
MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQEL
QQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTP
PRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTT
ESAISSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRT
QIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRKMQQ*
a.a.
length
InterPro Name
length(26), motif(12:37) 26 IPR015880 Zinc finger, C2H2-like [Domain]
length(28), motif(13:40) 28 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain [Domain]
length(24), motif(14:37) 24 IPR007087 Zinc finger, C2H2 [Domain]
length(27), motif(169:195) 27 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain [Domain]
length(26), motif(173:198) 26 IPR015880 Zinc finger, C2H2-like [Domain]
length(24), motif(175:198) 24 IPR007087 Zinc finger, C2H2 [Domain]
length(23), motif(208:230) 23 IPR015880 Zinc finger, C2H2-like [Domain]

Gene function information  Gene family PPI viewer Similarity Search Tool TACT
H-Inv ID HIT000016178
H-Inv cluster ID Locus viewHIX0006554
Accession number AK091311.1
CAGE tag ID NA
EST ID NA
Transcript feature  Help Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Coding potential  Help Protein coding; 
Definition Juxtaposed with another zinc finger protein 1; TAK1-interacting protein 27; Zinc finger protein 802;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q86VZ6)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence Protein evidence
PubMed ID 11371647126902051470203915489334163972221797400518772439ALL
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol JAZF1
HGNC aliases NA
HGNC name JAZF zinc finger 1
DDBJ NA
UniProt JAZF1
EC number NA
GGDB
(GlycoGene Database)
Gene symbol NA
Familly NA
Designation NA
Expression NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000106384
No. of interaction 10
Interaction partner(s) HIP000023351HIP000045470HIP000054521HIP000054521HIP000089276HIP000089276HIP000115797HIP000318272HIP000381995HIP000381995
BIND NA
DIP NA
MINT NA
HPRD 03253; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:221895
KEGG GENES KEGG GENES(221895)
GeneCard GeneCardJAZF1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Curation status Human curated
Notes NA
Related H-InvDB links Gene familyGene family;  Similarity Search ToolSimilarity Search Tool TACTTACT
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome. 
NA

Gene ontology information
Molecular function metal ion binding (GO:0046872);  nucleic acid binding (GO:0003676); 

Subcellular localization information  Last modified:27-May-2015
WoLF PSORT nuclear; 
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified:27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
170 215 1x3cA1 2e-05 16.7 42/61 g.37.1.1
Related H-InvDB links GTOP GTOP

Gene expression information  H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 225798_at;  225800_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 225798_at;  225800_at; 
HG-U133_Plus_2 225798_at;  225800_at; 
HG-U95 51726_at;  57216_at; 
HG-U95A NA
HG-U95B 51726_at; 
HG-U95C 57216_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2994403;  2994404;  2994405;  2994406;  3043265;  3043266;  3043267;  3043268;  3043278;  3043319;  3043337;  3043385;  3043386; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P399858; 
Whole Human Genome Oligo Microarray:PGID247 A_32_P36694; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:27-May-2015
Disease relation Disease name:NA
Related information in OMIM OMIM ID:  606246;  Title: JUXTAPOSED WITH ANOTHER ZINC FINGER GENE 1
Co-localized orphan diseases NA
Disease related mutation NA
Literature-Extracted GENe-Disease Associations (LEGENDA) LEGENDA Gene name Entrez Gene ID:(221895)
Disease Entrez Gene ID:(221895)
Substance Entrez Gene ID:(221895)
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA

Evolutionary information  Evola Help Last modified:27-May-2015
Relationship Species Accession number MGI Links
Orthology Mus sp. (Mouse) AK050474 MGI:2418193 G-integraG-integra
Orthology Danio sp. (Zebrafish) AY366304 G-integraG-integra
Orthology Gallus sp. (Chicken) BX931062 G-integraG-integra
Orthology Pongo sp. (Orangutan) CR857957 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000006438 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000009425 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00017472001 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00034122001 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000146416 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000159107 G-integraG-integra
Orthology Rattus sp. (Rat) XM_001065610 G-integraG-integra
Orthology Macaca sp. (Macaque) XM_001088841 G-integraG-integra
Orthology Pan sp. (Chimpanzee) XM_001163921 G-integraG-integra
Orthology Monodelphis sp. (Opossum) XM_001362641 G-integraG-integra
Orthology Canis sp. (Dog) XM_532499 G-integraG-integra
Orthology Bos sp. (Cow) XM_868795 G-integraG-integra
Orthology Equus sp. (Horse) XR_044580 G-integraG-integra
Phylogenetic tree [View by ATV]
Neighbor-joining (phb) 
Related H-InvDB links EvolaEvoladN/dS (under constraction); 

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information  VaryGene Repeat mask viewer
 Single Nucleotide Polymorphism (SNP) and indel  VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
135 .. 135 G/A rs10255700 - 5'UTR
176 .. 176 A/G rs201758844 - CDS Nonsynonymous[Ile4Val]
208 .. 208 C/T rs200272199 - CDS Synonymous[Cys14Cys]
224 .. 224 G/A rs150373313 - CDS Nonsynonymous[Gly20Arg]
277 .. 277 C/T rs199528037 - CDS Synonymous[His37His]
347 .. 347 A/G rs201724327 - CDS Nonsynonymous[Ile61Val]
382 .. 382 G/A rs140416830 - CDS Synonymous[Glu72Glu]
478 .. 478 C/T rs200368941 - CDS Synonymous[Ser104Ser]
490 ^ 491 -/T rs35265588 - CDS
495 .. 495 C/T rs183174892 - CDS Nonsynonymous[Pro110Leu]
547 .. 547 G/A rs151189134 - CDS Synonymous[Pro127Pro]
556 .. 556 C/T rs142184731 - CDS Synonymous[Ser130Ser]
564 .. 564 A/G rs17854206 - CDS Nonsynonymous[Asp133Gly]
583 .. 583 T/C rs141025431 - CDS Synonymous[Tyr139Tyr]
598 .. 598 C/T rs146807750 - CDS Synonymous[Ser144Ser]
652 ^ 653 -/C rs35580907 - CDS
745 .. 745 C/T rs148892911 - CDS Synonymous[His193His]
748 .. 748 T/G rs186782040 - CDS Synonymous[Ala194Ala]
851 .. 851 T/C rs143697346 - CDS Nonsynonymous[Phe229Leu]
910 .. 910 T/C rs199875128 - 3'UTR
918 .. 918 C/T rs200932726 - 3'UTR
987 .. 987 A/G rs145217792 - 3'UTR
995 .. 995 A/G rs182104681 - 3'UTR
999 .. 999 A/G rs149983347 - 3'UTR
1057 .. 1057 T/C rs111924759 - 3'UTR
1217 .. 1217 G/A rs190282399 - 3'UTR
1242 .. 1242 G/A rs201958658 - 3'UTR
1265 ^ 1266 -/T rs201755269 - 3'UTR
1309 .. 1309 T/C rs187048138 - 3'UTR
1445 .. 1445 A/T rs113399875 - 3'UTR
1472 .. 1472 C/A rs140006286 - 3'UTR
1473 .. 1473 G/A rs73297549 - 3'UTR
1865 .. 1865 T/C rs183762027 - 3'UTR
1926 .. 1926 C/T rs147478753 - 3'UTR
2146 .. 2146 A/G rs73075359 - 3'UTR
2252 .. 2252 T/C rs191500697 - 3'UTR
2275 .. 2275 A/C rs187624610 - 3'UTR
2288 .. 2288 T/C rs182074216 - 3'UTR
2460 ^ 2461 -/TGTT rs142764054 - 3'UTR
2464 .. 2464 T/C rs73075357 - 3'UTR
2472 .. 2472 C/G rs185104866 - 3'UTR
2486 ^ 2487 -/TAAG rs72196461 - 3'UTR
2534 .. 2534 C/A rs180712662 - 3'UTR
2554 .. 2554 C/T rs114700625 - 3'UTR
2601 .. 2601 G/A rs75940382 - 3'UTR
2670 .. 2670 A/T rs144683734 - 3'UTR
2728 .. 2728 C/T rs188624103 - 3'UTR
2809 .. 2809 A/C rs140941341 - 3'UTR
2928 .. 2928 T/C rs183893860 - 3'UTR
3001 .. 3001 C/T rs3182941 + 3'UTR
3088 .. 3088 T/C rs182116025 - 3'UTR
 Microsatellite (Short Tandem Repeat, STR)
No data available
 Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
 Repeat  Repeat mask viewer
Type Start End Strand
L2c 1611 1656 -
Database links H-GOLDHuman-Gene diversity Of Life-style related Diseases(H-GOLD)
Related H-InvDB links VaryGeneVaryGene Repeat mask viewerRepeat Mask Viewer