H-InvDB_9.0 released on May 27, 2015.
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H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
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---
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H-Invitational ID:
HIT000016178
Accession number:
AK091311
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Juxtaposed with another zinc finger protein 1; TAK1-interacting protein 27; Zinc finger protein 802;
Select format
Flat file
XML file
Nucleotide sequence fasta
Protein sequence fasta
Transcript original information
Accession number
AK091311.1
CAGE tag ID
NA
EST ID
NA
Clone Number
DFNES2007634
Experimental resources
NBRC
;
HGPD
;
Antibody (JAZF1)
;
Catalog (JAZF1)
;
Sequence data provider
Project:FLJ; Provider:FLJ/HRI;
Annotation project
H-Invitational FLcDNA
Length of cDNA
3116[bp] (No. of exon:5)[A:914 T:927 G:578 C:697]
Devision
HUM
Molecular type
mRNA
Library origin
Cell type
normal dermal fibroblasts (Neonatal Skin) (NHDF2564)
Tissue type
NA
Develpmental stage
NA
Sequence quality information
CDS feature
Complete CDS
Kozak sequence
NA
PolyA
NA
Vector/adapter sequence
NA
Frame shift
NA
Remaining intron
NA
Splice site acceptor (NAGNAG)
NA
Transcript quality feature
NA
Notes
NA
ATCTCTCTCGCCCCCTCTCCCTCCGTCCTGTCCTCGCCGCTCCCCTCACC CCGCCTCTCTCCCCCTCCCCCAGCCCCTCCTCTCCTCACCCCACCCGGCC TCCCTCCCTCCCTCGCCCGCCCGGCGCTCGCAGAGCCGACACCAGGGGGG CTCTCGATGTAGCACCATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCA ATACCTGCCGATTCGGGGGCTGCGGACTCCACTTCCCCACCCTGGCCGAC CTCATCGAGCACATCGAGGACAACCACATCGATACAGATCCACGGGTTTT AGAAAAACAAGAATTACAGCAGCCAACCTATGTTGCCCTGAGTTACATAA ATAGATTCATGACAGATGCTGCCCGCCGAGAGCAGGAGTCCCTAAAGAAG AAGATTCAGCCGAAGCTCTCGCTGACTCTGTCCAGCTCAGTGTCTCGAGG GAATGTGTCCACTCCCCCACGCCACAGCAGTGGAAGCCTTACTCCCCCCG TGACCCCACCCATCACCCCCTCCTCTTCATTCCGCAGCAGCACTCCGACA GGCAGCGAGTATGACGAGGAGGAGGTGGACTATGAGGAGTCGGACAGCGA TGAGTCCTGGACCACAGAGAGTGCCATCAGCTCCGAAGCCATCCTCAGCT CCATGTGCATGAATGGAGGGGAAGAGAAGCCTTTTGCCTGCCCAGTTCCT GGATGTAAAAAGAGATACAAGAATGTGAATGGCATAAAGTATCACGCTAA GAATGGTCACAGAACACAGATTCGTGTCCGCAAACCATTCAAGTGTCGCT GTGGGAAGAGTTACAAGACAGCTCAGGGCCTGCGGCACCACACAATCAAT TTCCATCCCCCGGTGTCGGCTGAGATTATCAGGAAGATGCAGCAATAACA TGCTGGTCATAACTGTGCCAAGAAATCCTCACCAGCAGTTGCTGATTTTG AAAACAGCCACCTTTTTTCAGGGGAAGCATTCAGCAACCCTTTAAAGAAA AAGAATTAAATGCATGCTTTAAATTTTTTCTGTAATTTTGGAATGATGTA TCTTTGTAGAGTTAATGATTTTGTACATTTGCACATGTAATCATCATACC CATTTTCATTACTTTGATATAAGGTGCTAAACAAAAAAAGCTCTAGGTTC TTCAGCACATTTCCCCCAAAACAAAATAAAATTGAGGGCATGTTGCATAT TGTTGAATTGTATTGCGGTGGTATCAACCTGGGGGGAGGAGGGGCTGGCA CTGAGATTTTTTTTTCAAGATTGTAATGTGATTGAAGTTTTCAACACATC AACTCACATATGTTCAAAACCAAAATAATACCTTCATTATCAAACTGGTT ACCATGCCTTACATAATGGAGTTAGTATTTGTGAGTAGAAAGACTTTAGG TAATGGAAATATAAATAAGAAAGAATGTTTAACATAATATGCTAAAAATA TTTTCATATTTAAATAACATACGTAAAGGTGTGCTTTCTGTGTTTTATAT TATCTTGCAAATCCTTTTGCCCTTTAAAAAGCTGAAAATCTTGCCATCTG ACTTACTAGTCATTTTAGTGTTATAAATGGCATTTTGTACAAAATAGTCT ATTCAGTTCGTTCATTCATTTAACACACATTGATTGAGTGCCTGCTGGGT ACAAGGGATTCAATTTATGCCTATTGATATCTGCGGACCAAGATACCCAT TTAGTGAAATACTTTTTTCCCTGAAATCTGTTAGAAAAGACTTTGAAATA CTTCAGTGCAAAGTGTGTGTGTGTGAAGTTTAGTTATATCTTCATCTTCA GATGAAGTTTTAAAGCACTTTGTAGTTCTCTATTGCCAACAATTTAATGT TTATGTGTTGCCAATTCTTGCAACCACTGCCCTACCAAACCTGTGGGTTG CAAATCAGAACTAAAATTCTAAGCACGTTTCAAAGATGAACACTTTTGTT AAGACCCCTATTGCCTCTTCTTCATGCTCATTTTTTACTTTTTTTAAAAG GTACTTTTCTCATCACATTGTAGAGAGGTCTGCATTCTCATTGGAAATGT CTGTTTAGCTTTATAAAACAAACACTTTGCTGAAATAGGAAAATGAGCCT TATTGACAATTAAGTGCTTCTTGCAGCAGGTGGTCAAAGAAAAGCATGAC TAATACGACCTATTAGAGTAATCTACATCTGGACCATTCCTTAAGTTTTT CCTCACCGACAGTACCATCATGCCTTGAGTGTTCTTTTCTCCCAAGTGCT ATTCCTTAAACACGAGAGTTTACCAGTTGCCTAATAATGCAATAAAAAAT GCTTTGAGATAGCTAACTGCCCATAAAACAAACTCAAATTGCTTATAAAG TTTCTTCCCATGTTCCCATTTGATGAAAAGTCTTACATCACATATAACTG GGAAGCAGGGGTCCCTCCTCAATTTTCAGACATTTTGAAAGGATGACAGT TCTGTTTGTTAGATGAGTAAACCTCTATATTCATAAGTTCTAAAATCCTT CATTATGAGGGATTCAAAGTATTTATAAAAACACTGCCCTCTAAAAATTT CCTCAGATCTGAAGTATGGTCTTGGTCCTGAATATACAGTGTTATCCTAT GTTTAAAAGGGTGATCCAGACATGAGACGCAACTAGTTGGTGCATAAGAA GGCCCCACTTGGCTATTTCATATCTACCTACAATTGACCAAAAAAAATTT TTTAGGCCAGCAATTATTATTTAGCTTCGCTCTTTCTAGTGCAAGAAACT GCAGGCTGGATCAGTAGTTCAACAGCTAAACAGTCATAAAATAGTCATTG TGCATGTTAAATTTCTTTCAATGCTTTCAAAGATAAATTCCAATTTCTAT TTACTTATTCATTGTGACAGTATTACTAAACAGGTAAGGATGGGAATATT TTGTTATACTGTGTATAGTGAATGTATTGTACTGTGTCTGTGAAAACTGT GCTTTAAATTATATTTTCATATGTTTTGTTGGGGACAGAGCACATTAAGT CTGAAAGCAACAGAGGTTTGTTTTAGAACTGAAGGCAATTTAATCAAAAT TCCTGTCAAGAAAAGCTGCTTATAAATGTAAATGAAATCACATTTAAAAT AAACTGCCTCTGACCC
Gene structure information
H-Inv cluster ID
HIX0006554
Genomic location
Chromosome
7
Location
7p15.1-7p15.2
Position
27870201- 28220362
Strand
-
Possible duplicated location(s)
NA
Gene structure
5 exon(s)
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:221895
;
KEGG GENES
KEGG GENES(221895)
;
GeneCard
JAZF1
;
*GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome alignment
;
Predicted CDS information
HIP ID
HIP000106384
Predicted CDS
167..898; 243[aa]; Orientation:+2;
Codon Adaptation Index (CAI).
0.817
Database links
RefSeq
NP_778231
;
UniProt
Q5RDF5
;
Q86VZ6
;
CCDS
CCDS5416
;
MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQEL QQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTP PRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTT ESAISSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRT QIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRKMQQ*
Motif information
a.a.
length
InterPro
Name
26
IPR015880
Zinc finger, C2H2-like [Domain]
28
IPR013087
Zinc finger C2H2-type/integrase DNA-binding domain [Domain]
24
IPR007087
Zinc finger, C2H2 [Domain]
27
IPR013087
Zinc finger C2H2-type/integrase DNA-binding domain [Domain]
26
IPR015880
Zinc finger, C2H2-like [Domain]
24
IPR007087
Zinc finger, C2H2 [Domain]
23
IPR015880
Zinc finger, C2H2-like [Domain]
Gene function information
H-Inv ID
HIT000016178
H-Inv cluster ID
HIX0006554
Accession number
AK091311.1
CAGE tag ID
NA
EST ID
NA
Transcript feature
Representative transcript;
Splicing isoform
Coding potential
Protein coding;
Definition
Juxtaposed with another zinc finger protein 1; TAK1-interacting protein 27; Zinc finger protein 802;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q86VZ6
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Experimental evidence
Protein evidence
PubMed ID
11371647
;
12690205
;
14702039
;
15489334
;
16397222
;
17974005
;
18772439
;
ALL
;
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
JAZF1
HGNC aliases
NA
HGNC name
JAZF zinc finger 1
DDBJ
NA
UniProt
JAZF1
EC number
NA
GGDB
(GlycoGene Database)
Gene symbol
NA
Familly
NA
Designation
NA
Expression
NA
KEGG metabolic pathway
NA
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000106384
No. of interaction
10
Interaction partner(s)
HIP000023351
;
HIP000045470
;
HIP000054521
;
HIP000054521
;
HIP000089276
;
HIP000089276
;
HIP000115797
;
HIP000318272
;
HIP000381995
;
HIP000381995
;
BIND
NA
DIP
NA
MINT
NA
HPRD
03253;
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:221895
;
KEGG GENES
KEGG GENES(221895)
;
GeneCard
JAZF1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Curation status
Human curated
Notes
NA
Related H-InvDB links
Gene family;
Similarity Search Tool
;
TACT
;
fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.
NA
Gene ontology information
Molecular function
metal ion binding (
GO:0046872
); nucleic acid binding (
GO:0003676
);
Subcellular localization information
Last modified:27-May-2015
WoLF PSORT
nuclear;
Target P
Not predicted
SOSUI
soluble protein
TMHMM
soluble protein
PTS1
Not targeted
Related H-InvDB links
LIFEdb;
JRE-1.4.0 or later is required.
Download JRE at
Sun's web site.
Protein structure information (GTOP)
Last modified:27-May-2015
Start
End
PDB_ID
E-value
Identity
Coverage
SCOP_ID
170
215
1x3cA1
2e-05
16.7
42/61
g.37.1.1
Related H-InvDB links
GTOP
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
NA
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
225798_at; 225800_at;
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
225798_at; 225800_at;
HG-U133_Plus_2
225798_at; 225800_at;
HG-U95
51726_at; 57216_at;
HG-U95A
NA
HG-U95B
51726_at;
HG-U95C
57216_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2994403; 2994404; 2994405; 2994406; 3043265; 3043266; 3043267; 3043268; 3043278; 3043319; 3043337; 3043385; 3043386;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P399858;
Whole Human Genome Oligo Microarray:PGID247
A_32_P36694;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;
Disease/pathology information
Last modified:27-May-2015
Disease relation
Disease name:NA
Related information in OMIM
OMIM ID:
606246
; Title: JUXTAPOSED WITH ANOTHER ZINC FINGER GENE 1
Co-localized orphan diseases
NA
Disease related mutation
NA
Literature-Extracted GENe-Disease Associations (LEGENDA)
Gene name
Entrez Gene ID:(221895)
Disease
Entrez Gene ID:(221895)
Substance
Entrez Gene ID:(221895)
Related H-InvDB links
DiseaseInfo Viewer
;
LEGENDA
;
Evolutionary information
Last modified:27-May-2015
Relationship
Species
Accession number
MGI
Links
Orthology
Mus sp.
(Mouse)
AK050474
MGI:2418193
G-integra
Orthology
Danio sp.
(Zebrafish)
AY366304
G-integra
Orthology
Gallus sp.
(Chicken)
BX931062
G-integra
Orthology
Pongo sp.
(Orangutan)
CR857957
G-integra
Orthology
Oryzias sp.
(Medaka)
ENSORLT00000006438
G-integra
Orthology
Oryzias sp.
(Medaka)
ENSORLT00000009425
G-integra
Orthology
Tetraodon sp.
(Tetraodon)
GSTENT00017472001
G-integra
Orthology
Tetraodon sp.
(Tetraodon)
GSTENT00034122001
G-integra
Orthology
Takifugu sp.
(Fugu)
SINFRUT00000146416
G-integra
Orthology
Takifugu sp.
(Fugu)
SINFRUT00000159107
G-integra
Orthology
Rattus sp.
(Rat)
XM_001065610
G-integra
Orthology
Macaca sp.
(Macaque)
XM_001088841
G-integra
Orthology
Pan sp.
(Chimpanzee)
XM_001163921
G-integra
Orthology
Monodelphis sp.
(Opossum)
XM_001362641
G-integra
Orthology
Canis sp.
(Dog)
XM_532499
G-integra
Orthology
Bos sp.
(Cow)
XM_868795
G-integra
Orthology
Equus sp.
(Horse)
XR_044580
G-integra
Phylogenetic tree [View by
ATV]
Neighbor-joining (phb)
Related H-InvDB links
Evola
;
d
N
/
d
S
(under constraction);
Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information
Single Nucleotide Polymorphism (SNP) and indel
Location
Variation
dbSNP ID
Strand
CDS/UTR
Translation
135 .. 135
G/A
rs10255700
-
5'UTR
176 .. 176
A/G
rs201758844
-
CDS
Nonsynonymous[Ile4Val]
208 .. 208
C/T
rs200272199
-
CDS
Synonymous[Cys14Cys]
224 .. 224
G/A
rs150373313
-
CDS
Nonsynonymous[Gly20Arg]
277 .. 277
C/T
rs199528037
-
CDS
Synonymous[His37His]
347 .. 347
A/G
rs201724327
-
CDS
Nonsynonymous[Ile61Val]
382 .. 382
G/A
rs140416830
-
CDS
Synonymous[Glu72Glu]
478 .. 478
C/T
rs200368941
-
CDS
Synonymous[Ser104Ser]
490 ^ 491
-/T
rs35265588
-
CDS
495 .. 495
C/T
rs183174892
-
CDS
Nonsynonymous[Pro110Leu]
547 .. 547
G/A
rs151189134
-
CDS
Synonymous[Pro127Pro]
556 .. 556
C/T
rs142184731
-
CDS
Synonymous[Ser130Ser]
564 .. 564
A/G
rs17854206
-
CDS
Nonsynonymous[Asp133Gly]
583 .. 583
T/C
rs141025431
-
CDS
Synonymous[Tyr139Tyr]
598 .. 598
C/T
rs146807750
-
CDS
Synonymous[Ser144Ser]
652 ^ 653
-/C
rs35580907
-
CDS
745 .. 745
C/T
rs148892911
-
CDS
Synonymous[His193His]
748 .. 748
T/G
rs186782040
-
CDS
Synonymous[Ala194Ala]
851 .. 851
T/C
rs143697346
-
CDS
Nonsynonymous[Phe229Leu]
910 .. 910
T/C
rs199875128
-
3'UTR
918 .. 918
C/T
rs200932726
-
3'UTR
987 .. 987
A/G
rs145217792
-
3'UTR
995 .. 995
A/G
rs182104681
-
3'UTR
999 .. 999
A/G
rs149983347
-
3'UTR
1057 .. 1057
T/C
rs111924759
-
3'UTR
1217 .. 1217
G/A
rs190282399
-
3'UTR
1242 .. 1242
G/A
rs201958658
-
3'UTR
1265 ^ 1266
-/T
rs201755269
-
3'UTR
1309 .. 1309
T/C
rs187048138
-
3'UTR
1445 .. 1445
A/T
rs113399875
-
3'UTR
1472 .. 1472
C/A
rs140006286
-
3'UTR
1473 .. 1473
G/A
rs73297549
-
3'UTR
1865 .. 1865
T/C
rs183762027
-
3'UTR
1926 .. 1926
C/T
rs147478753
-
3'UTR
2146 .. 2146
A/G
rs73075359
-
3'UTR
2252 .. 2252
T/C
rs191500697
-
3'UTR
2275 .. 2275
A/C
rs187624610
-
3'UTR
2288 .. 2288
T/C
rs182074216
-
3'UTR
2460 ^ 2461
-/TGTT
rs142764054
-
3'UTR
2464 .. 2464
T/C
rs73075357
-
3'UTR
2472 .. 2472
C/G
rs185104866
-
3'UTR
2486 ^ 2487
-/TAAG
rs72196461
-
3'UTR
2534 .. 2534
C/A
rs180712662
-
3'UTR
2554 .. 2554
C/T
rs114700625
-
3'UTR
2601 .. 2601
G/A
rs75940382
-
3'UTR
2670 .. 2670
A/T
rs144683734
-
3'UTR
2728 .. 2728
C/T
rs188624103
-
3'UTR
2809 .. 2809
A/C
rs140941341
-
3'UTR
2928 .. 2928
T/C
rs183893860
-
3'UTR
3001 .. 3001
C/T
rs3182941
+
3'UTR
3088 .. 3088
T/C
rs182116025
-
3'UTR
Microsatellite (Short Tandem Repeat, STR)
No data available
Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD)
No data available
Repeat
Type
Start
End
Strand
L2c
1611
1656
-
Database links
Human-Gene diversity Of Life-style related Diseases(H-GOLD)
;
Related H-InvDB links
VaryGene
;
Repeat Mask Viewer
;