H-InvDB_8.3 released on March 26, 2013. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

Home Quick guide Navi BLAST Site map Download Contact us Help

Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000014632 Accession number: AK058026 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Hypothetical short protein.

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number AK058026.1 CAGE tag ID NA EST ID NA Clone Number STM07657 Experimental resources   NBRC ; HGPD ; Sequence data provider Project:FLJ; Provider:FLJ/IMSUT;  Annotation project H-Invitational FLcDNA Length of cDNA 1890[bp] (No. of exon:1)[A:592 T:532 G:410 C:356] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type stomach mucosa Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) NA Transcript quality feature NA Notes NA

ATACAGCGATCACCTAGAAAACACTTTTCTAATTTTCTTTTGATAGGATT CGTATTTGTGTCGAGAAGTGTTTTTTAACGTCTAGAATACAGTGGCCTGA GAGTTACCCGAGGCACATGTGGATAGGTACGTCCTGGCTCCCACCAGGAT GCTCGCTCCATTTTGTGTCTCAGCCTTCCGTCGAAAGTTTTCATTTGTTC GTTTGCTTTTTAAGAAAGAGTTTTTGATAATTCTGTCTTAGAAGGATGAG TAGTTGTCTCATTAAGAAGACTCTTGGTGGTAGCATGGTCTGACTAGCTT AAGGTACAGTCTTTCCTCTTTGAGTTTCCTGTGGTTTTACTAACTCTTTG CTTTCCCTCTGACATAAAAACTAGAAGCCATAAATTACGGATAAATTCCA CTACGTAAAATAAGAGATCTTTAAAACTCTGCATGGCAAAGCCACTATAA GACAAGTAAAAAACTAAACTGGGAGAAAAATAGTTGCAGCTTATATCTCA GAGAAAAGATAATTTCCCTAATGCTGGGGTTGGGAACTACAGCCCAAGGC CCATATCTGGCCTGCTGCCTGTTTTTATGAATCAAGTTTTATTAGAACAC AGCCACACTCATTTGTTTGCATATTGTTTGTGGCTGCTTTCACCCTATGG TGGCAGAATTGAATAGCTGCAACAGGGACCTTATGGTCCACAAAACCAAC AGTATTTATTATCTGGCACTTCACAGAAAAGTTTGCCAACTCTTGCTCTG ATGAATAAGGAGTTGCTACAACTACAAACCAATATGAAAAGACCAACAAA CCAGTAGAAAAATAGGCAGGAGATATGTTTGTTAGTGTCTCAGGAAAACA AAGCAATAGCAAACAGGTTTCTCCACAAATGCTTCTTCTCCCCAAATGGG GCAACTTACAGAGGTGAGGGCAGGATTTTGGGGACAAAAAGGGAATGACA TTGTGACGCTCGGAGACCTGCAAATGTGGGAAGCTATTACTATCCCTGGG ATTGAAGGCAGGGACAAAGAGAGAGAACGGCATTGCCGGAGCAGGAAAGA TGGGTCATCCGAAGAAGGCTGTGATCATGGAGGATGTAGCCACTGTGAGA AATATGTCCTTGAAGCAGGATGGAAATGGGAAAGATATCTCTCCTTCCAC CTGCTAACCTCCTGCTAGTGCCTCCCAGAAGTTATCAGAGGAGGGAGTCC AGGTGATGCTGTCCTCAGGGGTGAGCTTCCTATGACACAGATGAAAAGCT CCTCAGCTCATTCATAATAAGAGCAGTGCAAATGAATATGATACTGAAAT GTCACTTTTAACCTATCAGATTGGCAAACAGCAGAATGTTAACACCTTGT ATTGGCAAGGGTATAGGGAAACAGGTACTATATAGATACAGATATGTATA TATGAAGGTAATATCTTTCAAAATTATAAATTCATATATCCTTTGACTCA GCAATTACATTTATAGGAATTTAGCTAATACATGATACTTTAGCTAATAC ATGAAATGACCTATGTGTAAGGTTATTTATTGCAACCTTATTTGTAATAG GAATACAATGGAGATAACCTAAATGTCTATCTGTAGGGAACTGGTTATAT AAATTATGCTACATCCATTCAAGGGAATTCTCTGAAGCCATAAAAAACGA TGAGGAAGCTCTTTGTGTCCTCATATGAAATCAACGCTCAGTTATGCCAT TAAGAGTACACAGAATTTGTCTCAGCTTTGGCTTTCATAACTAAATGATG ATAATAAAATAAAAGGCCAGGCGTGGTGGCTCATGCCTATAATCCCAGCA CTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCAT CCTGGCTAAGATGGTGAAACCCCATCTCTACTAAAAGTAC

Gene structure information

H-Inv cluster ID		HIX0001759
Genomic location	Chromosome	1
	Location	1q44
	Position	246200040- 246201929
	Strand	-
Possible duplicated location(s)		NA
Gene structure		1 exon(s)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000056879 Predicted CDS 1050..1157;  35[aa];  Orientation:+3;  Codon Adaptation Index (CAI). 0.795

MGHPKKAVIMEDVATVRNMSLKQDGNGKDISPSTC*

Gene function information

H-Inv ID		HIT000014632
H-Inv cluster ID		HIX0001759
Accession number		AK058026.1
CAGE tag ID		NA
EST ID		NA
Transcript feature		Representative transcript;
Coding potential		Protein coding;
Definition		Hypothetical short protein.
Similarity category		Category: Hypothetical short protein(Category VI).
		Hypothetical short protein.
Experimental evidence		NA
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
	DDBJ	NA
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000056879
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	NA
	KEGG GENES	NA
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Human curated
Notes		NA
Related H-InvDB links		Gene family;  Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	extracellular;  cytosol;  mitochondria;
Target P	Other
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	NA
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	NA
		HG-U133_Plus_2	NA
		HG-U95	NA
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2464994;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	NA
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name:NA
Related information in OMIM		OMIM ID:NA Title:NA
Co-localized orphan diseases		OMIM ID:  115665;  116600;  155600;  600975;  605225;  605606;  606788;  606852;  606928;  607317;  607671;  608543;  608553;  608995;  610320;  612367;  612596;
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	NA
	Disease	NA
	Substance	NA
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 27 .. 27 T/C rs74928267 - 5'UTR 118 .. 118 T/G rs35196924 - 5'UTR 243 .. 243 A/- rs34236143 - 5'UTR 265 .. 265 A/T rs61839459 - 5'UTR 374 .. 374 G/A rs74817542 - 5'UTR 388 .. 388 C/A rs80269309 - 5'UTR 473 .. 473 G/T rs76661530 - 5'UTR 579 .. 579 G/C rs6693308 - 5'UTR 599 .. 599 A/C rs78140110 - 5'UTR 641 .. 641 C/T rs74593816 - 5'UTR 863 .. 863 A/G rs77861070 - 5'UTR 1028 .. 1028 C/T rs58058446 - 5'UTR 1192 .. 1192 A/T rs77364368 - 3'UTR 1316 .. 1316 T/C rs76625374 - 3'UTR 1391 .. 1391 G/T rs34556721 - 3'UTR 1405 ^ 1406 -/G rs34364090 - 3'UTR 1423 .. 1423 A/T rs76334632 - 3'UTR 1425 .. 1425 T/G rs77549096 - 3'UTR 1426 .. 1426 A/C rs76908739 - 3'UTR 1427 .. 1427 T/A rs74973538 - 3'UTR 1540 .. 1540 A/G rs10924460 - 3'UTR 1631 .. 1631 T/C rs55957320 - 3'UTR 1681 .. 1681 T/C rs114478337 - 3'UTR 1684 .. 1684 A/G rs117802172 - 3'UTR 1711 .. 1711 C/G rs10802321 - 3'UTR 1768 .. 1768 C/G rs10802320 - 3'UTR 1806 .. 1806 G/A rs112437019 - 3'UTR 1870 .. 1870 C/A rs113061784 - 3'UTR 1889 .. 1889 A/G rs112822187 - 3'UTR 1890 .. 1890 C/A rs71638310 - 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  Type Start End Strand MER58A 526 745 + LTR33A 906 1177 - L1MC4a 1237 1681 + AluY 1765 1890 + Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;